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**Priority**: high
@bschilder will provide lists of genes driving the association between each significant phenotype-cell type association (ie genes in both lists with the highest specificity quant…
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Optionally, have the predictor return a data frame with missing genes (if any, and `impute = TRUE`). This would allow the user to have a backtrace of their runs.
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Hi @EricKutschera
When I ran ESPRESSO, the abundance file reported around 13,000 genes, but rmats-long produced a `differential_genes.tsv` file with only 9,800 genes. I'm a bit confused about how …
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Hi,
Scanpy/squidpy can plot mutliple genes at once and save as a image file. such as
`sc.pl.umap(adata, color=["genes1", "genes2", "genes3"], save="a.pdf")`
This is very convinient.
while spatial…
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want to be able to align sea star coelomocyte RNA seq data to the pycno genome.
The files provided that I have access to are of transcripts. Wiki page of the key files I have [here](https://github…
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### Description of the issue:
If .grRules contains genes that are not in the .genes field, `exportModel` has no problem exporting the model, but the generated SBML is invalid and will cause errors wh…
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I noticed a correlation between counts and tumor/healthy prediction.
(I am using all non-epithelial cells as reference).
Any tips on how to avoid this?
![Screenshot 2024-09-18 at 12 26 46](https:…
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### Labels
[BUG][MINOR]
### Description
there are two different cryokinesis genes. not two of it on a subject, but two separately researched genes.
### Steps to reproduce
research gen…
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Hi, I am trying your method to construct the mt genome, it is very fast which surprised me, My fastq data quality is not very good, I found the final result has multiple scaffolds and many same genes …
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When I originally started developing chanjo2 I kind of copied the behavior of chanjo -> Include in stats onlt transcripts associated with mRNA. For instance the POT gene has several transcripts:
…