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hello,
i am screening the minion generated sequences of bacterial genome and getting these results. even after geeting killed the sequences are showing hits on these genomes. is it running properly?…
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13:17:08 - [1;37mINFO[0m - |--Parsnp 2.0.5--|
13:17:08 - [1;37mINFO[0m -
***********************************************************************
SETTINGS:
|-refgenome: /share/home/wanglamei…
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Hello developers,
Thank you for developing a nice benchmarking tool. How to generate reference genomes in json format for BinBencher assessment? I couldn't understand from the documentation…
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### Description of the bug
Hi.
I'm encountering an error with the methylsig pipeline when using bwameth aligner. The pipeline runs fine with Bismark, but my mapping is low (~40%) and I want to com…
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Hi,
Thanks for the useful package you provided, I m trying to repeat your analysis on testdata so then I will use scFusion on my single cell RNA-seq ALL dataset to find fusion genes. I have an issu…
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I tried to align whole genome reads (hg19) generated from pbsim using GraphAligner.
However, the program crashed when building minimizer seeder from the graph.
This is the error message that I got:…
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## Check Documentation
I have checked the following places for your error:
I have checked both of these and looked through the introduction to see which steps might require the genome.
- [x] …
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Hi,
I wonder if anyone in this community can help me figure out the reason behind the discrepancy in counts. Please see below:
I am using HTSeq-count to generate counts from two different types …
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Hello dear developers,
I have run PECAT on a diploid plant genome (heterozygosity=3.3) and obtained a primary (4.7Gb) and alternate (2.6Gb) set and haplotype1 (4.7Gb) and haplotype2 (2.8Gb). Do yo…
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I try to run the RNA-seq pipeline, but got this message:
```
Seq2science has trouble querying the assembly providers. Try again in a bit.
To see the error stack trace run seq2science with --debug…