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This is an incomplete list, but for example:
1. "too many open files" errors occur in Bash for large numbers of genomes. At a minimum adjusting ulimit for these might be a good idea, but it would b…
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Will need this to highlight in the eventual publication
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Hi Diener,
would it possible to provide detailed description on the procedures that generated those GEM reference database? I found it quite useful while I am hesitating to use it in my manuscript wi…
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Hello @cdanielmachado, other developers and all in the community,
I am interested in performing analysis on my genome-scale community model, which I created using CarveMe. Specifically, I want to u…
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Hi, I am trying to create synteny between phages.
###upload files
s0
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title: OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes
DOI: 10.1073/pnas.1714530115
url: https://pubmed.ncbi.nlm.nih.gov…
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- [ ] Editor should be able to handle giant sequence loaded
- [ ] onSave hook should have option to just save the changes
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We have two options here: cluster style allreduce or hogwild, we need back of the envelope calculations for which of the two is best. Assuming current machine is on a spinning disk, figure out howmuch…
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Dear developer:
We found the website(https://locityper.vercel.app/test_dataset) reference genome unsuitable for the test analysis.
I think this is caused by the wrong chromosome number, which is v…
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I noticed some occasional messages while running version 0.2.2 that loads inbetween `Starting accession #/# (%)`, such as:
1. `Error: Failed to send request`
2. `Error: Invalid checksum line forma…