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Hi,
Thanks for develping such a useful tool for community modeling. I wanna ask if the q2-micom have a function that can extract single genome-scale model from the database base on taxonomy annot…
Ql-cy updated
1 month ago
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## Target functionality
tINIT is an (umbrella name for an) algorithm that obtains a subset of a genome-scale metabolic model based on the gene expression (typically in healthy/diseased bulk tissue …
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I just recently found out about miniprot and have been testing it out as an alternative to MetaEuk in my VEBA metagenomics workflow software suite (https://github.com/jolespin/veba). When I ran minip…
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## Pending Issues
1. @SESDNA to select the gene reference.
1. @SESDNA @jahilton -`development_stage_ontology_term_id` - agree on draft development stages as STRONGLY RECOMMENDED candidates
1. `ti…
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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Hey,
I have a question regarding the three normalization methods that you applied. Actually it makes a difference whether to apply for example SL on raw data and log2 the data for visualization, or t…
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Hi All, From some [constructive feedback](https://github.com/bradduthie/resevol/commit/c213c489c84ba1e87beda41dc6cd111a9f182eb5#diff-c5bc2dfcbcf3824db0336fb029e23df4ab2898dfbd396e5a14edac143cea1d39R6)…
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Now that we've reconfigured and refactored the phasing pipeline to improve SV performance on 10Mbp, we probably need to make additional changes to improve scalability for whole chromosome/genome runs.…
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such as https://www.wikipathways.org/index.php/Pathway:WP1438
How can we annotate the species?