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Good afternoon,
I am still working on this package, and I have found a problem that I didn't see before. When applying cell_signaling() function, I get interactions between the different clusters, bu…
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# Glioblastoma Phase Contrast Cell Segmentation (U-Net)
Bioimage.io -- an AI model repository for deep learning.
[https://bioimage.io/?tags=deepimagej&id=deepimagej%2Funet2dglioblastomasegmentation]…
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Hi cellxgene-census team,
I am using cellxgene to train a foundation model, and I used scGPT and cellxgene census tool to download scRNA data.
When I set the release date as "2023-05-15", I have 5M…
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One of bioCADDIE's key use cases is to find datasets based on the disease studied in the dataset. (N.B. not all datasets are a study a disease, but many are).
Searching Datamed for "Glioblastoma" or …
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Hi, recently I try to use your algorithm in data from https://glioblastoma.alleninstitute.org/, but bug occur, may get your help in debugging it?
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In one of the mockup data files a "Pathology" field exists, where two values exists. GBM and AIII. I assume GBM = Glioblastoma, but I can't find a pathology with the acronym AIII.
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Dear Laffy,
I read your new [glioblastoma paper](https://www.cell.com/cell/abstract/S0092-8674(19)30687-7) and would like to try your methods on our single-cell RNA-seq data.
But I have the foll…
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https://doi.org/10.1158/2159-8290.CD-22-0196
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this check…
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Hi, I tried this package with the tutorial, but I encountered an error when running cnaPlot.
This is my code:
obj = cnaPlot(cna = cna,
order.cells = TRUE,
subtitle = '…
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Contrary to #15, we will reuse the same instance of each small molecule class declared in a model, which should declutter things like this:
![image](https://user-images.githubusercontent.com/2678599/…