SCA-IRCM SingleCellSignalR issues

SCA-IRCM / SingleCellSignalR

R package for Bioconductor submission

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issues

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How to get the genes for each enrichment term

#28 alievakrash opened 2 months ago
0
Error in plot.window(...) : need finite 'xlim' values in `SingleCellSignalR::intra_network` and classification about the scores of gene-related pathways

#27 denvercal1234GitHub opened 6 months ago
0
Better visualisation by visualize_interactions() for large number of clusters?

#26 denvercal1234GitHub opened 6 months ago
0
GraphML output has unconnected nodes

#25 imaigene opened 6 months ago
1
No interactions found

#24 alievakrash opened 1 year ago
1
Missing MHC interactions when they are expected

#23 dn-ra opened 1 year ago
0
cell_signaling() doesn't write into files

#22 pcr08 opened 1 year ago
1
Error in cell_signalling and inter_network

#21 pcr08 opened 1 year ago
6
Use own marker genes instead of those generated by cluster_analysis

#20 Mushin closed 2 years ago
1
What is the difference between the results of choosing autocrine and paracrine?

#19 realzehuali closed 2 years ago
2
How to use previous clustering

#18 sylvia-science closed 2 years ago
1
A question about the Pwc_ReactomKEGG database

#17 GoldJinJin opened 3 years ago
2
NA output in all cell_signalling tables

#16 jhb1980 closed 3 years ago
1
mus musculus and mm2Hs

#15 melissa-sanabria opened 3 years ago
1
Is it possible to create a user generated database to be used as "markers"?

#14 mcap91 closed 3 years ago
1
No significant interaction found

#13 FerdinandoPucci closed 3 years ago
0
Error in checkForRemoteErrors(val) : 3 nodes produced errors; first error: subscript out of bounds

#12 FerdinandoPucci opened 3 years ago
8
Parallel processing in cluster_analysis

#11 eperkan opened 3 years ago
0
out put of intra_network function

#10 jmlim2 closed 3 years ago
0
Error in as.igraph.vs(graph, from) : Invalid vertex names

#9 jmlim2 opened 3 years ago
2
No such file as table_dge_cluster 1.txt in the cluster-analysis folder

#8 EAC-T opened 3 years ago
3
How to make the diagrams in Figure 3F, 3G, 3H? They're so visually informative!

#7 levinhein opened 3 years ago
1
How to make flow diagram like in paper Fig4G?

#6 gt7901b opened 3 years ago
1
clusterID changed after Retreiving the results of the preprocessed Seurat object

#5 gt7901b closed 3 years ago
2
Error in `.rowNamesDF<-`(x, value = value)

#4 hemadelon closed 3 years ago
2
Can't install SingleCellSignalR on R 3.6.1

#3 moeedakbar closed 4 years ago
0
Plese provide example_data.txt file

#2 stemangiola closed 4 years ago
2
Fail to run cell_signaling on Seurat data

#1 tinjac closed 4 years ago
2