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Although I downloaded the GOSemSim package to R (V4.1.2) without any problems with the codes below, I cannot find the package in the library after the download is finished. What path can I follow?
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@ManuelGoepferich
`getDb` is no longer exported from `GOSemSim`. The maintainer moved the function to `ReactomePA`. He is not currently exporting the function but I recommended to him that he does.
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eggNOG can functionally annotate a large number of non-model organisms. Once we are able to parse the output of eggNOG, we can easily combine it for analysis with GOSemSim and clusterProfiler.
see …
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When I installed BioMedR through CRAN, got the error message for some dependencies like "fmcsR", "ChemmineR", "GoSemSim".
> ERROR: dependency '"fmcsR", "ChemmineR", "GoSemSim"' is not available fo…
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R 4.3.3版本，clusterProfiler4.6.0版本，运行以下代码时报错
kegg No gene can be mapped....
--> Expected input gene ID:
--> return NULL...
尝试更新clusterProfiler包，提示： 载入了名字空间'GOSemSim' 2.24.0，但需要的是>= 2.27.2
于是，…
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conduct the DO analysis with DOSE::enrichDO(), problem with loading DOLite dataset.
```r
library(clusterProfiler)
library(org.Hs.eg.db)
library(enrichplot)
library(GOSemSim)
library(DOSE)…
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HI,
I am having issues to install clusterProfiler on my mac air M1 (R 4.2.2) RStudio Version 2022.12.0+353
first i did:
"> BiocManager::install("clusterProfiler")
'getOption("repos")' replace…
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I am trying to install clusterProfiler on Mac M1 12.2.1, but got the following errors.
> BiocManager::install("clusterProfiler")
Bioconductor version 3.14 (BiocManager 1.30.19), R 4.1.3 (2022-0…
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Hi,
I recently ran into the following error when using the `reduceSimMatrix()` function:
```
Error in FUN(X[[i]], ...) :
trying to get slot "Term" from an object of a basic class ("NULL") w…
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@GuangchuangYu , @huerqiang
At the Bioconductor support forum an issue/error was reported regarding the function `buildGOmap`: https://support.bioconductor.org/p/9156358/
I had a quick look at …