YuLab-SMU GOSemSim issues

YuLab-SMU / GOSemSim

:golf: GO-terms Semantic Similarity Measures

https://guangchuangyu.github.io/software/GOSemSim

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issues

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error: unable to open database file & workaround

#49 mauritsunkel opened 2 months ago
0
error in mclusterSim when a gene-set has only a single GO term

#48 ulo closed 2 months ago
1
buildGOmap issues, therefore 2 suggestions

#47 guidohooiveld opened 5 months ago
2
A little changes in readgaf，readblast2go and godata function.

#46 jhbioinformlab closed 6 months ago
2
文章更新

#45 GuangchuangYu opened 6 months ago
0
对接通用的go注释

#44 GuangchuangYu opened 6 months ago
2
added function check_installed

#43 Clearmind777 closed 10 months ago
0
Add example for read.blast2go

#42 yangtcai closed 6 months ago
0
Feat: add new function read_blast2go

#41 yangtcai closed 1 year ago
0
Support HPO.db and MPO.db

#40 huerqiang closed 1 year ago
0
GOSemSim package download error

#39 kahvecirem opened 1 year ago
1
Is it possible to run in parallel?

#38 snijesh closed 1 year ago
2
relace DO.db with HDO.db

#37 huerqiang closed 1 year ago
5
Avoid eval-parse when loading orgDb

#36 Nelson-Gon closed 2 years ago
1
Add ICmethod "TCSS"

#35 qibaiqi closed 2 years ago
32
need to recompute IC after dropping evidence codes

#34 dkainer opened 3 years ago
1
Information Content/goSim could be calculated for more GO terms?

#33 dorrenasun opened 3 years ago
1
Error that impacts BioCor

#32 llrs closed 3 years ago
5
Running calculations in parallel

#31 y1zhou opened 3 years ago
2
results from function `mgoSim` based on "Wang" method

#30 DeepColin opened 3 years ago
1
Failing build on Bioconductor

#29 llrs closed 4 years ago
2
Compilation error due to breaking change in Rcpp

#28 mjsteinbaugh closed 4 years ago
2
Compiling error in installing GOSemSim in CentOS7

#27 R1V3RJ1s closed 4 years ago
5
GOSemSim and Org package with different field name in DB

#26 Luis-WP-Arge opened 4 years ago
0
Information content value is Inf

#25 datduong closed 4 years ago
2
GO:0097708 PROBLEM

#24 sarasaezALS opened 5 years ago
0
mgeneSim with Resnik measure produces incorrect results

#23 deniseduma opened 5 years ago
3
how to use mgenesem to compute for two different species

#22 samKamal9 closed 5 years ago
1
geneSim Function Error

#21 BradBalderson closed 5 years ago
1
missing genes in output matrix

#20 benedettafrida closed 6 years ago
1
not all genes/proteins will show up in the similarity matrix

#19 benedettafrida closed 6 years ago
5
NA semantic similarity scores for some MF terms

#18 ghost closed 6 years ago
1
BMA combine测试问题反馈

#17 wangshun1121 closed 6 years ago
2
calculating similarity for a large set of genes

#16 elise625 opened 6 years ago
1
files for online discussion

#15 GuangchuangYu closed 5 years ago
1
GOSemSim: restricting similarity measures to sub-ontologies?

#14 GRamstein closed 5 years ago
2
Speed up

#13 llrs closed 7 years ago
2
Adding more algorithms of semantic similarity

#12 llrs opened 7 years ago
9
not compatible with STRSXP error

#11 chenhao392 closed 7 years ago
4
mgoSim avg command

#10 wkpalan closed 7 years ago
1
Uninformative error

#9 llrs closed 7 years ago
1
Filter Go terms by type of relationship

#8 sfujio opened 7 years ago
1
`new` and `is` methods not imported from `methods`

#7 LiNk-NY closed 7 years ago
1
Compilation error on Linux with GCC 6.1.1

#6 khughitt closed 8 years ago
7
worm to celegans switch

#4 vladpetyuk closed 9 years ago
1
change worm to celegans

#3 vladpetyuk closed 9 years ago
1
mgoSim can not get values when r -f file.R from command line

#2 tkosaka1976 closed 9 years ago
3
Fast infoContentMethod() implementation

#1 alyst closed 9 years ago
1