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Hi Oliver,
Thank you for this nice tool. Have you found a way to share the latest GTDB update? I'll be highlyinterested to get the last version.
Thanks,
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Hello,
I see the statistics on GTDB, the amount of genomes doubled in the database since release 95, which is used in gunc. Is there a plan to update the GTDB database?
Best,
Pavlo
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Hello, I always report errors when running this software. It shows that this is the reason, but I installed the database. Do you know why?
![image](https://github.com/mrumi/MetaCompare2.0/assets/1717…
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There is a new gtdbtk and no databases are available for it on Galaxy Australia yet because there is nothing in the `gtdbtk_database_versioned` - our previous entries have gone in the `gtdbtk_database…
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I would like to create a GTDB DNA Taxonomy database in mmseq2. However, in the manual, it can only create the GTDB aminoacid databas. Could you please advise how I can create the DNA taxonomy database…
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Hi Henk,
I was building index for GTDB v214 and it took more than several hours for the bv version. But only 20 min for the original version:
colorid_bv build -r ./gtdb_genomes_reps_r214_name_colori…
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https://s3.us-west-1.wasabisys.com/org-kiwix-zimit/other/www.gtdb.org_39664362.zim
https://github.com/openzim/zimit/assets/62152714/17fb42eb-97eb-4717-85e4-da060c6231e1
https://www.gtdb.org/…
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Hi, I was wondering if the gtdb reps 220 had been sketched (or is about to be)? Otherwise, would it be possible to provide/point to the command you use to do it? I imagine it's fairly straightforward,…
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## Expected Behavior
## Current Behavior
## Steps to Reproduce (for bugs)
Please make sure to execute the reproduction steps with newly recreated and empty tmp folders.
## MMseqs Output (for…
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We discussed in GBIF that even if COL adopts LPSN as the source for Bacteria we still want GTDB names in there to integrate eDNA data. Higher ranks are not needed, but at least at genus & species leve…