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Hey guys
Great work! I am trying to get OpenFold running on our cluster and having problems with hhblits on uniclust30. I adapted the longer paths to just "path" for privacy reasons. Help would be …
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I've tried using the standard alphafold2 setup via docker (converted to a singularity container) via the setup described at https://github.com/kalininalab/alphafold_non_docker, and both result in the …
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Hello,
I am trying to run the example code to predict protein monomer 7u7w_A and I get the following error
`./SE3nv-20240131.sif -m rf2aa.run_inference --config-name protein
/usr/lib/python3.10/…
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I get a Segmentation fault at hhblits (RaptorX_Property_Fast/Fast_TGT.sh line 120-138), simillar with the problem described at link below:
https://github.com/soedinglab/hh-suite/issues/42
Howev…
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Thank you for your work, but I had some trouble trying to install and use it.
At the end is my error message. I noticed that these two issues are very similar to my error message:
https://github…
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(RFAA1) [2200012187@hr-6-6-login RoseTTAFold-All-Atom]$ python -m rf2aa.run_inference --config-name protein
/gpfs/share/home/2200012187/mambaforge/envs/RFAA1/lib/python3.10/site-packages/hydra/_inter…
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Hi!
I am trying to install the dependencies of AGNOSTOS following your instructions here: https://github.com/functional-dark-side/agnostos-wf/blob/master/AGNOSTOS_usage.md
And everything seems to…
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Hi All,
I'm using HHblits in the context of Porter5 to help predict secondary structure. Porter executes HHblits with the flags -cpu 2 -n 3 -maxfilt 150000 -maxmem 8 -v 2. My system runs Pop!_OS li…
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(RFAA) kinshuk@kinshuk-lab:/media/kinshuk/My Book/RoseTTAFold-All-Atom$ python -m rf2aa.run_inference --config-name covalent
/home/kinshuk/anaconda3/envs/RFAA/lib/python3.10/site-packages/hydra/_inte…
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Hi,
thank you for your great work !
I've successfully installed RFAA and run an example with 4DFR and MTX ligand.
But with Protein/Nucleic acid complex, i've this error message:
[...]
Running HHb…