-
When a job produces a file, we should have a link to such files from the HistomicsTK interface.
-
Thanks for developing this amazing piece of opensource software. It has helped us a lot and we are actively using it as the basis of our UI.
One of the features that can add a lot of flexibility to…
-
[Here](https://distributed.readthedocs.io/en/latest/setup.html) is some info on how to setup a Dask cluster
Once the cluster is setup, the cluster scheduler address can then be passed to Slicer CLI…
-
Currently there isn't a documented method to easily migrate one deployment to another (as far as I'm aware). I recently ran into a problem where I had to tear down a deployment and move to another, bu…
kwsp updated
8 months ago
-
at the moment the [virtual folder plugin](https://github.com/girder/girder/blob/master/plugins/virtual_folders/girder_virtual_folders) injects itself just to the REST API of a folder. However, when us…
-
I had an web-viewer based on OpenSeadragon, and I would like to combine the viewer with HistomicsTK and girder to better analysis and manage the whole slide images. It said large image is overlaid wit…
-
see https://github.com/girder/girder_worker/pull/97
At least provide the option to set up cron jobs at some scheduled interval to call Docker GC.
-
New histomicstk user here. Trying to add histomicstk modules to an existing image analysis pipeline and running into a dead end in a digital slide archive tutorial. Any solutions/advice would be much …
-
I am working on cell counting model and using DSA+Histomics for it, Can i also include a text number in the middle of the region of interest for which the nuclei segmentation boundaries are generated?…
-
When using the girder_worker docker image, unable to run docker from within the worker container due to permission issue. Specifically the docker group does not appear to be created and worker user ad…