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I would like to be able to evaluate the choice of parameter values for the Kepler Mapper using the Betti Numbers rather than visually (looking at the simplicial complex plotted). This would be helpful…
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Dear all,
I am trying to create a pipeline to automate the binding energy calculation of several variants of a homotetrameric protein in complex with a medium/big-sized ligand (CoA). I haven't deci…
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Hello,
We are using CRISPResso2 pooled to map reads to multiple amplicons and it's working very nicely as long as the guide matches the amplicon perfectly. However, we also have cases where a guid…
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I have heard great things about CHORD and I'm really excited to try it. So far the installation works and I can run it, but the results do not match my expectations. For example, I am attaching the re…
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Last year at BioITWorld I chatted to sofware vendors who had various snazzy 3D features with a view to them searching some OSM frontrunners. I have to say, beyond polite interest, traction was mor…
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#### Description
The [STUMPY](https://stumpy.readthedocs.io/en/latest/index.html) library contains high-performance (using Numba and/or Dask) code for calculating the so-called "matrix profile" of a …
ulupo updated
7 months ago
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I would like to publicly recommend that all phenotype ontologies have their own
***X:Phenotype*** class, and require that all definitions are extended to
```
X:Phenotype and has_part some {...…
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Since Sage 9.2, the [spkg section of the Sage reference manual](https://doc.sagemath.org/html/en/reference/spkg/) is automatically generated from the information in the [SAGE_ROOT/build/pkgs/](htt…
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So I know there was a discussion a while back #573, about moving some files out of HITs to other places. The way I see it, there are only a few "real" HITs that have to be specified with axioms. These…
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I am opening this issue following our email so we can all define the spec we want for the PRNG evaluation pipeline and discuss each architecture.
Ideally, initially @EwanGilligan and @zaklogician c…