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Hi, It's a useful tool to rank those predicted neoantigen. But I encountered a bug that I am unable to resolve.
See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/us…
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Good day!
In your paper, you compared the impact of DeepNeo-MHC, NetMHCpan, and MixMHCpred on MHC binding prediction using different **extended data** collected from multiple publications, as shown…
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I was very curious to test the performance of mhcnuggets 2.3 on the latest dataset with TESLA validated neoantigen candidates published in Cell ([Key Parameters of Tumor Epitope Immunogenicity
Reveal…
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Help: please tell me how to solve this problem, thanks!
$ /path/Anaconda2/bin/deephlapan -P LNIMNKLNI -H HLA-A02:01
Using TensorFlow backend.
===========================================…
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Hello,
DeepImmuno might just be what I am looking for!
Unfortunately, I cannot clone the project without error, because some file names contain special characters:
new_imgt_scraping/new_imgt/n…
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Hi Frank,
First of all congrats and thanks to share this great tool!
I've managed to run it on a small subset of our own patients. We usually test the immunogenicity of neoantigens as longer ep…
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Hello, I am having an issue using deephlapan.
I used the docker installation on MacOS. When I run the program on a test peptide or a file of several peptides, it stop at the same step.
First, I get…
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Hi, I'm working on a project to extract features from PAAD patients from the ICGC database for neoantigen immunogenicity prediction in ML. This project follows the steps taken by the model creators. I…
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### This issue is a placeholder for a discussion related to the bio.tools COVID-19 related tools list.
https://covid-19.bio.tools
**What are the tools relevant to COVID-19?**
How can we best ke…
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Firstly, thank you for the development of the SNAF software!
I am encountering a memory overflow issue when running SNAF with 150bp paired-end FASTQ files.
## Environment:
OS: Ubuntu 20.04…