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Hello, based on the information you provided, I successfully replicated the model, and the results are excellent! In your article, you mentioned the function of the codebook 'to learn to cluster the a…
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A recent new feature in the UMAP package is the ability to use alternative metrics for the embedding space: https://umap-learn.readthedocs.io/en/latest/embedding_space.html
This has the effect of e…
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Aim here is to understand overall structure of qtls more generally.
possible plots/ analyses include:
- sfa analysis of posterior effect sizes. Then examination/plots of specific factors to see what…
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**Describe the bug**
cuML's t-SNE outputs vary from run to run, even when `random_state` is used or initial embeddings are provided (and #2549 is fixed).
**Steps/Code to reproduce bug**
```py
fr…
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Hi,
I have already my cell clustered by seurat, now I want to use cell router for trajectory analysis? how that would be please? saying cellrouter@sampTab will help but I don't know how to use that…
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Hi, thanks for posting this code!
I'm not sure I understand the training objective you're using - is it a variational auto-encoder?
Is `loss_seq` the Kullback-Libeler divergence - [line 141](htt…
ghost updated
6 years ago
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via Miroslav Valan
as promised, the exploratory analysis is now complete and the obtained results are congruent with the expectations. We used cca 8000 randomly chosen samples. The results are atta…
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Pose a question about one of the following possibility readings:
“[The unreasonable effectiveness of deep learning in artificial intelligence](https://www.pnas.org/content/pnas/early/2020/01/23/19…
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python eval_single_anndata.py
FileNotFoundError: [Errno 2] No such file or directory: '/dfs/project/cross-species/yanay/data/proteome/embeddings/Homo_sapiens.GRCh38.gene_symbol_to_embedding_ESM2.pt…
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