issues
search
snap-stanford
/
UCE
UCE is a zero-shot foundation model for single-cell gene expression data
MIT License
120
stars
15
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Ontology ID mappings
#43
bschilder
closed
3 weeks ago
3
Add conda env
#42
bschilder
opened
3 weeks ago
0
`Unexpected key(s) in state_dict: "transformer_encoder.layers...`
#41
bschilder
closed
3 weeks ago
5
Can I adjust the dimensions of the output from 1280 to 512?
#40
Jersey1234
closed
4 weeks ago
1
Genes without protein LLM embeddings
#39
bschilder
closed
4 weeks ago
2
IMA logistic classifiers
#38
bschilder
closed
3 weeks ago
1
Issue with Multi-GPU Distributed Computing Using UCE Model
#37
kelimeike
opened
1 month ago
1
How to get gene embeddings
#36
kelimeike
closed
1 month ago
3
Preprocessing of chicken retina dataset
#35
JiriBruthans
opened
1 month ago
0
Producing UCE embeddings for cell lines
#34
Ontos46
closed
2 months ago
1
probabilities contain NaN in numpy.random.mtrand.RandomState.choice
#33
mcrewcow
closed
2 months ago
8
What does the dimension 145469 mean?
#32
KatarinaYuan
closed
3 months ago
1
How to Use Multi-GPU to Inference the Embeddings
#31
KatarinaYuan
closed
2 months ago
1
How to get the pretrained weight file
#30
coffee19850519
closed
3 months ago
1
Input data of processed data
#29
fengzhanying
closed
3 months ago
1
What's the difference between the 4-layer model and the 33-layer model
#28
Jersey1234
closed
3 months ago
1
Original log-norm expression space
#27
chrarnold
closed
4 months ago
3
Other "Output dimension"
#26
fengzhanying
closed
4 months ago
1
Training UCE
#25
v-mahughes
closed
4 months ago
1
IMA sample issue
#24
v-mahughes
closed
4 months ago
7
Need help: Data Preparation and Model Setup for Data Integration Using UCE
#23
Yafei611
closed
4 months ago
6
Data information is missing
#22
kimmo1019
closed
4 months ago
0
Human lymph node AMI figure 2d
#21
v-mahughes
closed
4 months ago
7
About New Species
#20
zhonghuaxiaodangjiayo
closed
4 months ago
4
Understanding data integration
#19
maestriev
closed
4 months ago
7
NaN error during embeddings
#18
DanLesman
closed
4 months ago
6
Reproduce Logistic Classifier results
#17
v-mahughes
closed
4 months ago
9
Mismatch error when running UCE on ESM embedding of a new species.
#16
vinettey
closed
4 months ago
12
Location of human protein embeddings
#15
vinettey
closed
5 months ago
1
File potentially missing
#14
y-doctor
closed
6 months ago
3
Which ESM model to use for UCE input?
#13
vinettey
closed
6 months ago
1
Create LICENSE
#12
Yanay1
closed
6 months ago
0
Gene names in IMA dataset
#11
zhuizhui-jj
closed
6 months ago
1
Update requirements.txt
#10
Yanay1
closed
6 months ago
0
Questions about average running time
#9
HelloWorldLTY
closed
6 months ago
4
Simplify Embedding of novel species
#8
Yanay1
closed
6 months ago
1
Task we can address based on the embeddings
#7
HelloWorldLTY
closed
6 months ago
5
RuntimeError: [enforce fail at inline_container.cc:129] . file in archive is not in a subdirectory: species_offsets.pkl
#6
Abhishaike
closed
4 months ago
6
AnnData eval issue: cannot unpack non-iterable NoneType object
#5
viriditax
closed
2 months ago
15
file not found
#4
killerz99
closed
6 months ago
27
is there training code available?
#3
szalata
closed
4 months ago
4
Major refactor of single anndata eval
#2
yhr91
closed
8 months ago
0
Add first files
#1
Yanay1
closed
8 months ago
1