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I want to predominantly use IUC tools, because they are sustained best by the community.
Determining whether a tool is an IUC tool or not is not trivial, however - there can be false positives if fol…
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https://github.com/usegalaxy-be/galaxytools/tree/59e5e3c332ef43b04d5c88719c584a5ce6e86be5/astral
- [x] linting changes
- [x] Succesfully run tests
- [x] Went through IUC best practices document: …
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Thanks for contributing these phyloseq tools.
I'm wondering if we could integrate these tools into the IUC repository: https://github.com/galaxyproject/tools-iuc/blob/master/tools/phyloseq/?
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Rules like [this for raxml](https://github.com/galaxyproject/tpv-shared-database/blob/957d87883dde0c32f155da7634fb518b695a8866/tools.yml#L2277) allocate additional cores but because most people set `m…
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I would like to have a easy way to create a PR to the IUC repository to make it easier for users to contribute their work.
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**Describe the bug**
I'm trying to work around https://github.com/galaxyproject/tools-iuc/pull/6493 which produces a collection labelled `txt,tabular`.
**Galaxy Version and/or server at which yo…
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The Galaxy clair3 tool currently uses r941_prom_hac_g360+g422 model and r941_prom_sup_g5014 model.
https://github.com/galaxyproject/tools-iuc/blob/0ee665c3393af083833fdb9becbe6965d009e16c/tools/clai…
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There are many cases where test parameters are used that are not defined in the inputs.
I guess most cases are easy to solve, but may require a bit of research:
- check if the parameter was th…
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# Comments from: [natefoo](https://github.com/natefoo)
- [x] [Explicitly overriding $TMP*](https://github.com/goeckslab/Galaxy-Ludwig/blob/00f7da552741b6d3f576833329a9e18173ae5fd8/tools/ludwig_hype…
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There are toolshed identifiers inside Galaxy workflows, but these are not carried forward into the RO-Crate nor to the knowledge graph.
Example, from https://workflowhub.eu/workflows/7 we have `Gen…
stain updated
4 months ago