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I install kage via `pip3` which works fine:
```
pip3 install kage-genotyper
```
However, when I try to run it I get:
```
cgroza@ubuntu:~$ kage
Traceback (most recent call last):
File "…
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Hi,
I'm trying to run the kage index step of kage but I get the following error:
TypeError: __init__() missing 1 required positional argument: 'dtype'
My input VCF is only including SV.
The co…
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froster archive ..... will issue slurm job
```
cat /home/users/peterdir/.local/share/froster/slurm/froster-archive@+tmp+froster.Jrd+6j0_subdir-5791.out
ome/users/peterdir/.local/share/pipx/ven…
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giv mig noget kage pls :)
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### Operating System
- [X] Windows
- [X] macOS
- [X] Linux
- [X] FreeBSD
- [X] OpenBSD
- [X] Android
- [X] iOS
- [X] Nintendo Switch
- [ ] PlayStation 5
- [ ] Xbox
- [X] Web Browsers
### What featur…
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When I am trying to connect in kage it's showing me .." Network error, pls check if msfrpcd is is running and on which protocol, if all fine then double check host:port"
And I was try to update&upgra…
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Hi!
thanks for your advanced software! : )
How can I determine the memory size required for indexing?
I always get “not enough memory” when I run the `kage index` on a VCF with 2.5 million loc…
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Hi~
In the last days, I tried to use kage to genotype my population, but it won't work well, please help me take a look:
'''
kage genotype -i 2/PN2_SNP -r data_tmp/CRR493563 -t 16 --average-cov…
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Hi,
I encountered an error while running the kage index, which seems to be an issue during the parsing of the VCF file. My input files were a chromosome from the genome and a VCF file from PGGB, wh…
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Hi,
I'm trying to run the indexing step of kage on my data set but I get the following error:
`ValueError: zero-size array to reduction operation maximum which has no identity`
My input VCF is …