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Hello and thank you for the tool!
Would you be open to adding support for the new core_nt database in krakenuniq-download and krakenuniq-build? For reproducibility's sake it would be great to be able…
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### Description
Test to run krakenuniq classifier and compare the results for our validation samples
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Hi!
Thanks for this effort! I use kraken2 or krakenUniq with 16S databases. Any idea on how can i integrate this DB with these classifiers?
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Is this scripts could be working with krakenuniq reports? If yes how to fix it please
combine_kreports.py -r *-krakenuniq-report.tsv -o COMBINED.KREPORT --display-headers
>>STEP 1: READING REPOR…
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With the following command:
`krakenuniq --db /mnt/f/KrakenUniq --threads 3 --output /mnt/f/SAMPLE.krakenuniq --preload-size 7G SAMPLE.fastq.gz`
I get this output and error:
`/home/visitor/bin/kra…
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### Description of the bug
Hi,
I noticed that krakenuniq overwrites the outputs for SE samples if you have a dot in the sample name. This is not an issue for PE samples. I will attach the command…
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Hello,
We are currently using kraken2+bracken but would definitely want to use the advantages of krakenuniq to identify unique kmers to reduce false classification.
I came across this [publication](…
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Dear KrakenUniq team,
I have a theoretical question - I was wondering if you could suggest something here. I am using KrakenUniq to classify bacterial reads from RNA-seq experiments. The database …
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## Problem
In dsl2/eager3 we currently dont allow the combination ```--run_metagenomics --preprocessing_skippairmerging``` because we are not handling paired reads in the metagenomics subworkflow
…
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Hello,
We are currently using kraken2+bracken but would definitely want to use the advantages of krakenuniq to identify unique kmers to reduce false classification.
I came across this [publication](…