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I'm a new user of LIANA+ and currently working with a large dataset that includes approximately 300 samples (around 1.5 million cells). I have access to 4 GPUs, each with 48 GB of memory. I’m consider…
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Hello
I have been trying to install liana but keep running into the error below:
Error in pkgdesc$Version : $ operator is invalid for atomic vectors
In addition: Warning message:
In utils::pa…
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Hello,
Thankyou for your work on this package. I have been trying to run tensor decomposition on my data after successfully running the liana_bysample. But when I try to run liana_tensor_c2c it has…
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Our tests fail to run under python 3.12
```
/home/pyth/rust/liana/tests/venv/lib/python3.12/site-packages/_pytest/config/__init__.py:329: PluggyTeardownRaisedWarning: A plugin raised an exception du…
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**Describe the bug**
I was trying to follow the [tutorial](https://liana-py.readthedocs.io/en/latest/notebooks/prior_knowledge.html), but get the error: `AttributeError: module 'liana.resource' has n…
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hitting this after reorgs , while trying to spend a coin :
![image](https://github.com/user-attachments/assets/9006a684-2a94-4936-894d-df2c076a1ffd)
edit:
here the tx:
![image](https://github.co…
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Dear authors,
The liana_tensor_c2c took 4.5 hours to run but failed with the error: 'PreBuiltTensor' object has no attribute 'elbow_metric_raw' . But the code of liana_tensor_c2c showed that elbow…
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**Describe the bug**
I am trying to run CellChat and I am getting a AttributeError: 'SparseCSRView' object has no attribute 'A'.
**To Reproduce**
Here is the code to call the method. The "adata…
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Currently, downloading and storing resources is quite bare bones:
https://github.com/saezlab/liana-py/blob/main/liana/resource/_orthology.py
https://github.com/saezlab/liana-py/blob/main/liana/reso…
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As agreed, I report here some of the change requests to wording and similar related to the liana backend integration:
- [x] 1. The text in the choice of backend step should be adjusted. Now it look…