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I am encountering a permissions issue when running the pipeline under docker profile.
```N E X T F L O W ~ version 24.04.2
Launching `Katmon/main.nf` [cranky_mclean] DSL2 - revision: a3ec2e25…
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### Issues:
Loading of locations takes more time in all the places. By the time the results display the user loses patience and moves away from the page.
Env: prod, org name: Goonj
1. #### In Di…
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It would be helpful to include an example in the docs of how to prune a `data.tree` object in the same manner as `ape::drop.tip`
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In our preprint ARGs, the Pango lineage assignments of the sample sequences was produced by the NextClade tool. However, the consensus-based mutation definitions from the COVIDCG website, which were u…
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Freyja was recently added and also has a update parameter. To test this new functionality, we can run poreCov with a sample that has a very recent lineage assignment which is not part of the Freyja ve…
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Several loose comments in the thread below. I'll keep editing this top comment to keep track of ideas.
- [ ] Create an appendix of common species (e.g. based on participants in the course) and what…
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Hello, I have recently obtained data on several Mtb lineage 5 and M. canetti strains, and I have been using Mykrobe v0.13.0 to predict their species and lineage.
In the case of the Mtb lineage 5 sa…
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- I've seen one example so far where samples with the exact same node placement have different clade/lineage assignments.
- The base tree in this example is public-latest (2022-04-17).
- The two hi…
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This has recently been discovered by users of the SARS-CoV-2 lineage assignment tool pangolin in https://github.com/cov-lineages/pangolin/issues/441.
In essence, the latest build of 4.1.3 has ucx a…
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Dear,
I got this error
Do you have any idea how to fix it
Your help is appreciated .
Best regards
Error in current_scoring_matrix[unassigned_cells, cell_type_num[i]]