plevritis-lab CELESTA issues

plevritis-lab / CELESTA

Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information for multiplexed in situ imaging data. No training dataset with cell type labels is required.

Apache License 2.0

27 stars 9 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Cell assignment bug in second and later rounds

#25 Sz-Jason-Chen opened 2 months ago
0
Fix bug related to subsetting columns from dataframe

#24 DanInci opened 4 months ago
0
AssignCells user input thresholds

#23 mcaponegro opened 5 months ago
0
NAs are not allowed in subscripted assignments

#22 HelgaBergholtz opened 6 months ago
1
Command line interface for CELESTA

#21 LukasHats closed 6 months ago
0
Inconsistency between `prior_marker_info.csv` and `imaging_data.csv` cell type assignments

#20 asom opened 1 year ago
1
Error with CreateCelestaObject

#19 HMgalloway opened 1 year ago
1
Error in AssignCells function

#18 asasama12 opened 1 year ago
13
fix-bugs-Jan2023

#17 weiruo16 closed 1 year ago
0
Fix some bugs related to index out of bound

#16 weiruo16 closed 1 year ago
0
fix bugs and add clarification messages

#15 weiruo16 closed 1 year ago
0
pass in bandwidth argument to GetNeighborInfo

#14 dan11mcguire closed 1 year ago
1
subscript out of bounds

#13 afshinmoradi opened 2 years ago
7
NAs error

#12 afshinmoradi opened 2 years ago
4
Fix Bug? in FindCellsToCheck causing return of NAs in unassigned_cells and causes errors downstream

#11 andrewjUTSW closed 1 year ago
3
Edit readme file

#10 weiruo16 closed 2 years ago
0
Edited the readme file

#9 weiruo16 closed 2 years ago
0
Merge changes in CELESTA-edit_readme into the main

#8 weiruo16 closed 2 years ago
0
Add progress to create CELESTA

#7 tassicalim closed 2 years ago
0
Add unknown cell plotting

#6 tassicalim closed 2 years ago
0
Reverse unknown plotting

#5 tassicalim closed 2 years ago
0
Update README

#4 tassicalim closed 2 years ago
0
Update FitGmmModel

#3 tassicalim closed 2 years ago
0
Apply changes for Shiny app compatibility

#2 tassicalim closed 2 years ago
0
Clean up styling

#1 tassicalim closed 2 years ago
0