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I guess the current model v2 (https://storage.googleapis.com/cue-models/latest/cue.v2.pt) does not include support for linked read signals? If so, is there any plan to support this in a coming model? …
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I'm butchering breseq's intended use case and identifying gene mutants that arose during high throughput gene variant synthesis and tracking their abundance over a short, selective time course (< 48 h…
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I am running **ert/bwa-mem2 mem** and I have a weird segmentation error occurring, which is file specific to the fasta file and happens in about 1/4 of my assembled genomes. It is very annoying as it …
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> Alevin adopts efficient algorithms for cellular-barcode whitelist generation, cellular-barcode correction, lightweight per-cell UMI deduplication and quantification.
Is it possible to use Salmon …
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Hi,
sorry, this is more of a question (or a feature request, we'll see).
We are processing amplicon data, from which we want to trim PCR primers. The amplicon is shorter than the invidual paire…
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Hi,
First of all, yes I have read [this issue](https://github.com/chipsec/chipsec/issues/527) before posting a new thread. I have a similar problem, I'm using an Ice Lake LP platform (495 series ch…
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cutadapt 4.9
I have 16S amplicon reads that were sequenced with ONT that I am trying to demultiplex. Each sample was PCR barcoded with a 13 base barcode on both ends, so I expect a read to start wi…
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The readme of this repo reads the following:
> StarCoder2 is a family of code generation models (3B, 7B, and 15B), trained on 600+ programming languages from The Stack v2 [...]
The dataset linked …
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Hi authors, great paper just a couple of nitpicks in the paper that might make it a little clearer.
1.
To use it you have to provide a set of contigs resulting of a de novo transcriptome assembly…
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Hi
I'm working on scaffolding assembled contigs using ntLink and ntJoin. For this I have a set of long reads and four draft contig-level assemblies that were assembled using combinations of linked, s…