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LipidLynx converter not working (job 6f4d841da0738c3eb354b13d589f90870e21a0f6)
I have used Lipid Lynx a few times and successfully converted my lipid lists into BioPan format.
Last week, I tried …
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### Prerequisites
* [X] Put an X between the brackets on this line if you have done all of the following:
* Checked the online documentation: https://mimic.mit.edu/
* Checked that your is…
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Summary of request: Modify the information in an existing ROR record
Update record:
Name of organization: Lipides, Nutrition, Cancer
ROR ID: https://ror.org/04d70nb60
Which part of the record ne…
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Trying this [example](https://rdrr.io/bioc/lipidr/man/annotate_lipids.html)
`lipid_list
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I am new in the field of lipidomics, and I have been using your LipidLynxX tool for lipid nomenclature conversion. While I find the tool very useful, I have encountered an issue that I hope you can as…
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Hi Siyoung,
Suppose we choose to define a lipid, say POPC, as two residues, with the hydrocarbon group named as a residue TAIL and head-group (choline phosphate) as a residue HEAD. TAIL and HEAD …
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Old leaflet sorter appears to work here:
But the new one fails:
![image](https://…
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## Motivation
Membrane-protein systems account for ~ 60% of possible target space. Being able to calculate binding free energies for membrane-containing systems would be a significant advantage.
…
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We need a component that explicitly defines the solvent / environment of a system.
Examples use cases:
- Defining the system box + solvent molecules that a ligand will sit in
- Defining the a sys…
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A kinetic metabolic model of lipid metabolism in Saccharomyces cerevisiae that integrates fatty acid biosynthesis, glycerophospholipid metabolism, sphingolipid metabolism, storage lipids, lumped stero…