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When I use fastASSET to IBD and another non-immune disease, the result shows that snps founded by fastASSET all in MHC locus.Their Pvalue in IBD are >10^-8, but usually about 10^-4 in another disease.…
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I am interested in IBD and another inflammatory disease(not typically immune-associated but contains a subclass which is auto-immune ), MTAG founds pleiotropy locus all in hla locus. The pvalue of all…
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The `phasing_hmm` class defines `std::vector < char > VAR_TYP;` it uses this to hold signed values for example :
```C
#define VAR_PEAK_HET 0
#define VAR_PEAK_HOM -1
#define VAR_FLAT_HET -2
```
…
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Nice tool!
But when I used locityper to genotyping HGDP reads on my interested loci (five prime utrs which are usually shorter than 500 bp) with the command:
```
locityper add -d db -v vcf/chr21.vc…
yeeus updated
1 month ago
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Hi @BraunThomas,
I tried to use StraglrOn but I have some issues. I'm not sure that I use your addon correctly.
Here the command lines I used:
python straglron.py -o /path/output_directory --his…
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We had long discussion about locus equations that did not lead to anything conclusive. Now we have a new player in this game. Or rather a new board for the game: Do we want to handle contemporary rela…
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When trying to use phyluce_assembly_explode_get_fastas_file to explode the fasta file by locus, the by-locus argument is not recognized. I am using v 1.7.3
`phyluce_assembly_explode_get_fastas_fil…
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Here we enlarge hole size from 250 Kb to 400 Kb to capture those loci falling in 1Mb window. Let's see for how many we do so.
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This is what happens:
Locus 1 is an architectural locus with collected material
dock A deletes locus 1 at 10:00. That deletes all the collected materials and the architectural details (its own recor…
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The locus to gene prediction dataset is loaded to Platform. This dataset is used to populate credible set widget and locus to gene table. This table at this point only contains study locus id, gene id…