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It's turning out to be quite difficult to get MALDI data into a format that works with MSQL.
Note: I don't currently have access to any Vendor software to see what it can export.
My first go-to…
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Have this old Shimadzu MALDI that doesn't really allow bulk spectra exporting in the usual formats like mzml, but only in just `.xml`.
I tried using the default import function to try and parse thi…
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The default number of data points (5) works well for MALDI-TOF but causes the background and noise to be significantly underestimated when using MALDI-FTICR data.
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Currently various algorithms are available to chromatograms. For MALDI MS spectra without chromatography none are available for now. As the application is slightly different, re-using existing algorit…
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Especially the MALDI-quant parts
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Would be nice to get this into Galaxy to improve MALDI imaging in [GalaxyP](https://github.com/galaxyproteomics/tools-galaxyp).
Let me know if you have an R package or a python port :)
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`"n_init should be > 0, got {self.n_init} instead."`
The above error came due to
`cluster = KMeans(init="random", n_clusters=n_clusters, n_init="auto", max_iter=300).fit_predict(cube)` in `data_o…
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Hi. I have standalone Visium data and Mass spec data (Bruker) from the same tissue block (mouse colon). Would it be possible to use the ```semla``` package to get common x-y co-ordinates from both dat…
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Requests for text updates:
Under HuBMAP Assays, CODEX should probably be "CODEX Immunofluoresce…
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@oruebel Yesterday we uploaded a file that was acquired on a MALDI LTQ/XL (Thermo) and had been converted to mzML using msconvert with default parameters. BASTet correctly identified the unique m/z v…