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I have downloaded the xml file from "https://ftp.ncbi.nlm.nih.gov/pubmed/baseline/"
and then
```
{
"name": "XPathEvalError",
"message": "Error in xpath expression",
"stack": "----------------…
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What is the reason for causing this error?
```
Traceback (most recent call last):
File "/home/user/myproject/1-parse-xml-image-caption-inline.py", line 137, in
caption_dict = pp.parse_p…
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No projeto do pluing do Portal de Revista https://github.com/bireme/portalrev-wp-plugin, precisamos inicialmente dos campos para busca:
- title;
- subtitle;
- shortened_title;
- issn;
- country…
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Demo 3 techniques
1. Parse XML piecemeal using `Entrez.parse()`
2. Parse XML entirely using `Entrez.read()`
3. Parse MEDLINE stream piecemeal using `Medline.parse()`
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See https://github.com/UCDenver-ccp/translator-concept-recognition/issues/5
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fazer uma carga experimental de documentos MEDLINE-XML para o MongoDB (servidor dolomita17)
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Due to various issues with using the NCBI Entrez API (e.g, #257 ) we could explore using pubmed dumps instead of calling their API.
- the ftp dump page https://www.ncbi.nlm.nih.gov/pmc/tools/ftp/ …
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* [ ] Dublin Core
* [x] BIBFRAME (partly included via LOV)
* [x] EAD (Encoded Archival Data, for archival finding aids)
* [ ] VRA Core
* [x] ONIX
* [ ] SUTRS
* [x] BibJSON
* [ ] MPEG21-DIDL
* …
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It looks like the pubmed parser doesn't support the pubmed baseline files?
I get the error below. It also doesn't look like the test file is using a similar file format.
``` py
pubmed_dict = pp…
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@nlwashington we should figure out if we get this from @eichmann or pull ourselves. It is updated every day so we probably want a less frequent update cycle? (20-30K new citations per day). It is als…