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The metabolic pathways are very hard to consume when they display all of the small molecules.
It would be better if there was a toggle to "collapse small molecules" so that you could see only the…
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The queries used to find causal models currently look for 2 or more consecutive causal relations between acivities. Metabolic pathway GO-CAMs are connected via this pattern:
```
(MF1) -has_output-> …
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Hi Francisco,
Thanks so much for taking the time to develop these great tutorials.
In my project I am comparing two groups of species (Entero co-colonizers vs co-excluders) and have identified a…
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Hello,
By creating models for secondary metabolites biosynthesis I realized that part of the ChEBI chemicals are not available with the tool.
As an example, within the P. expansum patulin biosynthes…
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Thermodynamics constraints are rather important in metabolic modeling.
If not considered, they would lead to thermodynamically infeasible/implausible flux loops within flux sample.
*Loopless* spa…
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### What happened?
[Example.zip](https://github.com/APSIMInitiative/ApsimX/files/14440994/Example.zip)
```
Models.Core.SimulationException
---> System.Exception: N retranslocation exceeds stora…
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**Is your feature request related to a problem? Please describe.**
I have used A. thaliana models from the specialized literature, but they do not work with Metaboverse.
**Describe the solution yo…
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Really cool work on connecting metabolic activity to the olfactory representations learned by the GNN percept models! I was wondering how to best go about requesting code for model training/implementa…
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COBRA Models Module folder -> COBRA Models Module Python Files folder -> where could I find iAB_RBC_283.metabolism.json?
I could only find iAB_RBC_283.json in BIGG
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**Summary !!!**
- **BioModel Name**: Jiménez-Luna2021 - Coloring molecules for interaction with CYP3A4
- **BioModel Tag**: Machine learning model, Ersilia
- **Metadata Comments**:
The model…