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GeomScale
/
dingo
A python library for metabolic networks sampling and analysis
GNU Lesser General Public License v3.0
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fix typo in slow_fba, and a bug in fast_fba
#99
KeShih
closed
1 month ago
1
new interface for samples and fba, fva solutions and workaround for #96
#98
hariszaf
opened
2 months ago
0
rename biomass_function to objective_function, fixes issue #82
#97
hritikb
closed
1 month ago
0
Error using fva after sampling
#96
vfisikop
opened
3 months ago
6
Redundant methods in MetabolicNetwork
#95
vfisikop
opened
3 months ago
3
Refactor mmcs algorithm
#93
vfisikop
opened
3 months ago
0
Fix rounding test
#92
vissarion
closed
3 months ago
1
Update README installation instructions to be more user friendly #89
#91
rkstu
closed
3 months ago
0
solve issue #83: generate_steady_states fails when you edit a model's optimal percentage twice #83
#90
rkstu
closed
1 month ago
3
Update README installation instructions to be more user friendly
#89
rkstu
closed
3 months ago
5
Build volestipy with lpsolve
#88
vfisikop
closed
4 months ago
0
Update dingo to use volesti develop instead of volesti4dingo branch
#87
vfisikop
closed
4 months ago
0
loopless sampling
#86
hariszaf
opened
4 months ago
1
solve issue #83: generate_steady_states fails when you edit a model's optimal percentage twice #83
#85
rkstu
closed
4 months ago
4
Modernize LP solver interface
#84
vissarion
opened
5 months ago
1
`generate_steady_states` fails when you edit a model's optimal percentage twice
#83
hariszaf
opened
7 months ago
0
Consider renaming `biomass_function` routine
#82
hariszaf
closed
1 month ago
3
Create redundant_facet_removal_backup.py
#81
nitishmalang
closed
9 months ago
2
Create imp-16.py
#80
nitishmalang
closed
9 months ago
0
Dockerfile is added to the codebase
#79
ai-naymul
opened
9 months ago
8
Consider a docker image
#78
hariszaf
opened
9 months ago
1
Error in installation (incompatible versions of Python and numpy)
#77
savvas-paragkamian
closed
4 months ago
17
support of medium modification and cobra model loading
#76
hariszaf
closed
5 months ago
2
alternative suffix for sbml models
#75
hariszaf
closed
4 months ago
0
Modify model's medium
#74
TolisChal
closed
4 months ago
1
Expose HMC walks with Gaussian and exponential distributions
#73
guillexm
closed
10 months ago
0
rounding.py is excluded from github actions
#72
TolisChal
opened
11 months ago
5
Update README.md
#71
nitishmalang
closed
10 months ago
2
Fix bug in retrieving samples
#70
TolisChal
closed
11 months ago
0
Update README.md
#69
nitishmalang
closed
11 months ago
0
Exposed two HMC walks with exponential and Gaussian sampling from Volesti
#68
guillexm
closed
11 months ago
2
Sampling on the flux space of multiple metabolic networks
#67
vissarion
opened
1 year ago
2
non-uniqueness issue in dynamic FBA
#66
hariszaf
opened
1 year ago
1
sample asking for a min/max value of the objective function
#65
hariszaf
closed
4 months ago
3
Add volume computation support and motivation
#64
vissarion
opened
1 year ago
0
fix magic command denoter; issue #60
#63
hariszaf
closed
1 year ago
0
Fix poetry version 1.3.2 in actions.
#62
vissarion
closed
1 year ago
1
update colab; fix #60
#61
hariszaf
closed
1 year ago
0
Error importing MetabolicNetwork class from dingo package in Google Colab (GSoC 2023)
#60
samadpls
closed
1 year ago
1
Adding CodeCov
#59
bsarthak16
closed
1 year ago
0
Edits on copula illustration and export
#58
hariszaf
closed
1 year ago
2
Improve copula illustration and export
#57
TolisChal
closed
1 year ago
0
Bump future from 0.18.2 to 0.18.3
#56
dependabot[bot]
closed
1 year ago
0
Move the documentation to readme
#54
TolisChal
closed
1 year ago
0
Expose rounding methods
#53
TolisChal
closed
1 year ago
1
implement copula illustration in dingo pipeline
#52
TolisChal
closed
1 year ago
1
Add cobra package as a dependence.
#51
vissarion
closed
1 year ago
0
Load models
#50
hariszaf
closed
1 year ago
0
reorder sections and minor edits
#49
hariszaf
closed
1 year ago
0
Update poetry installation CI command
#48
vissarion
closed
1 year ago
0
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