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GeomScale
/
dingo
A python library for metabolic networks sampling and analysis
GNU Lesser General Public License v3.0
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reorder sections and minor edits
#49
hariszaf
closed
1 year ago
0
Update poetry installation CI command
#48
vissarion
closed
1 year ago
0
segmentation fault when ESS low
#47
hariszaf
opened
1 year ago
0
Experiments
#45
hariszaf
closed
1 year ago
1
include volume approximation
#44
Patrickens
opened
1 year ago
1
Expose uniform random walks
#40
Kostas-Pallikaris
closed
1 year ago
1
Update mention of unit tests in main README
#39
dymil
closed
2 years ago
2
Move updated tutorial to tutorials folder and copyedit
#38
dymil
closed
1 year ago
3
Make changes to code style
#37
dymil
closed
2 years ago
3
Copyedit main README + comments in volestipy.pyx
#36
dymil
closed
2 years ago
1
Fix typo in tutorial README
#35
dymil
closed
2 years ago
1
sampling using the maximum entropy probability distribution
#34
hariszaf
opened
2 years ago
2
Support ellipsoid sampling methods
#33
vissarion
closed
1 year ago
2
code coverage for dingo
#32
vissarion
opened
2 years ago
0
Add a boolean to control the preprocessing method
#31
TolisChal
closed
2 years ago
0
For Begginer
#30
nikdantani
closed
2 years ago
2
Fix the bug in sample_from_polytope function
#29
TolisChal
closed
2 years ago
0
Fix compile errors
#28
TolisChal
closed
2 years ago
0
Improve preprocessing
#27
TolisChal
closed
2 years ago
0
Read `.xml` models
#26
hariszaf
closed
1 year ago
4
Read `.mat` models
#25
hariszaf
closed
1 year ago
0
`NameError` when using the `sample_from_polytope` function
#24
hariszaf
closed
2 years ago
0
Compartments
#23
hariszaf
closed
1 year ago
2
Fix/json biomass index value
#22
vissarion
closed
2 years ago
0
sampler does not converge with iLJ478 model
#21
vissarion
closed
2 years ago
2
fast_inner_ball computes negative radius
#20
vissarion
closed
2 years ago
0
Error with biomass index handling after parsing json files
#19
vissarion
closed
2 years ago
0
Sampling on the flux space of multiple metabolic networks
#18
hariszaf
closed
1 year ago
3
dingo tutorial notebook
#17
hariszaf
closed
2 years ago
9
dingo crashes with various metabolic models
#16
vissarion
closed
2 years ago
4
Add examples and use-cases
#15
vissarion
closed
1 year ago
3
Add Contribution guidelines
#14
vissarion
closed
2 years ago
1
Knock out a reaction flux
#13
TolisChal
closed
3 years ago
0
Set Black code style
#12
TolisChal
closed
3 years ago
0
Fix tests
#11
TolisChal
closed
3 years ago
0
Add github actions
#10
vissarion
closed
3 years ago
0
Improve Python code
#9
TolisChal
closed
3 years ago
0
Update boost download link
#8
vissarion
closed
3 years ago
0
Restructure of Python code
#7
TolisChal
closed
3 years ago
0
Initialization of the default branch
#6
TolisChal
closed
3 years ago
0
Computation of the right nullspace of the stoichiometric matrix
#5
TolisChal
closed
3 years ago
0
Computation of the maximum inscribed ball of a convex polytope
#4
TolisChal
closed
3 years ago
0
Implementation of FBA
#3
TolisChal
closed
3 years ago
0
Implementation of FVA
#2
TolisChal
closed
3 years ago
0
Initialization - Add volesti as a submodule
#1
TolisChal
closed
3 years ago
0
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