issues
search
GeomScale
/
dingo
A python library for metabolic networks sampling and analysis
GNU Lesser General Public License v3.0
41
stars
27
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Tutorial is outdated
#107
KeShih
opened
6 days ago
0
Update documentation for PR #104
#106
KeShih
closed
1 week ago
0
Clustering and Graphs from steady-states correlation matrix
#105
SotirisTouliopoulos
closed
1 week ago
1
Add pyoptinterface_based_impl.py and integrate it
#104
KeShih
closed
2 weeks ago
2
Functions for correlation matrix, copula indicator and plotting
#103
SotirisTouliopoulos
closed
3 weeks ago
0
abandoned
#102
KeShih
closed
1 month ago
0
Add pulp_based_impl.py and pulp_impl_test.py
#101
KeShih
closed
3 weeks ago
0
PreProcess class for reactions removal
#100
SotirisTouliopoulos
closed
1 month ago
0
fix typo in slow_fba, and a bug in fast_fba
#99
KeShih
closed
3 months ago
1
new interface for samples and fba, fva solutions and workaround for #96
#98
hariszaf
opened
4 months ago
0
rename biomass_function to objective_function, fixes issue #82
#97
hritikb
closed
3 months ago
0
Error using fva after sampling
#96
vfisikop
opened
5 months ago
6
Redundant methods in MetabolicNetwork
#95
vfisikop
opened
5 months ago
3
Refactor mmcs algorithm
#93
vfisikop
opened
5 months ago
0
Fix rounding test
#92
vissarion
closed
5 months ago
1
Update README installation instructions to be more user friendly #89
#91
rkstu
closed
5 months ago
0
solve issue #83: generate_steady_states fails when you edit a model's optimal percentage twice #83
#90
rkstu
closed
3 months ago
3
Update README installation instructions to be more user friendly
#89
rkstu
closed
5 months ago
5
Build volestipy with lpsolve
#88
vfisikop
closed
6 months ago
0
Update dingo to use volesti develop instead of volesti4dingo branch
#87
vfisikop
closed
6 months ago
0
loopless sampling
#86
hariszaf
opened
6 months ago
1
solve issue #83: generate_steady_states fails when you edit a model's optimal percentage twice #83
#85
rkstu
closed
6 months ago
4
Modernize LP solver interface
#84
vissarion
opened
7 months ago
1
`generate_steady_states` fails when you edit a model's optimal percentage twice
#83
hariszaf
opened
8 months ago
0
Consider renaming `biomass_function` routine
#82
hariszaf
closed
3 months ago
3
Create redundant_facet_removal_backup.py
#81
nitishmalang
closed
11 months ago
2
Create imp-16.py
#80
nitishmalang
closed
11 months ago
0
Dockerfile is added to the codebase
#79
ai-naymul
opened
11 months ago
8
Consider a docker image
#78
hariszaf
opened
11 months ago
1
Error in installation (incompatible versions of Python and numpy)
#77
savvas-paragkamian
closed
6 months ago
17
support of medium modification and cobra model loading
#76
hariszaf
closed
7 months ago
2
alternative suffix for sbml models
#75
hariszaf
closed
6 months ago
0
Modify model's medium
#74
TolisChal
closed
6 months ago
1
Expose HMC walks with Gaussian and exponential distributions
#73
guillexm
closed
1 year ago
0
rounding.py is excluded from github actions
#72
TolisChal
opened
1 year ago
5
Update README.md
#71
nitishmalang
closed
1 year ago
2
Fix bug in retrieving samples
#70
TolisChal
closed
1 year ago
0
Update README.md
#69
nitishmalang
closed
1 year ago
0
Exposed two HMC walks with exponential and Gaussian sampling from Volesti
#68
guillexm
closed
1 year ago
2
Sampling on the flux space of multiple metabolic networks
#67
vissarion
opened
1 year ago
2
non-uniqueness issue in dynamic FBA
#66
hariszaf
opened
1 year ago
1
sample asking for a min/max value of the objective function
#65
hariszaf
closed
6 months ago
3
Add volume computation support and motivation
#64
vissarion
opened
1 year ago
0
fix magic command denoter; issue #60
#63
hariszaf
closed
1 year ago
0
Fix poetry version 1.3.2 in actions.
#62
vissarion
closed
1 year ago
1
update colab; fix #60
#61
hariszaf
closed
1 year ago
0
Error importing MetabolicNetwork class from dingo package in Google Colab (GSoC 2023)
#60
samadpls
closed
1 year ago
1
Adding CodeCov
#59
bsarthak16
closed
1 year ago
0
Edits on copula illustration and export
#58
hariszaf
closed
1 year ago
2
Improve copula illustration and export
#57
TolisChal
closed
1 year ago
0
Next