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## Problem
In dsl2/eager3 we currently dont allow the combination ```--run_metagenomics --preprocessing_skippairmerging``` because we are not handling paired reads in the metagenomics subworkflow
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I have 960 metagenomics sequencing samples and each one has >30million read pairs. Is it possible to use coassembly mode with 1T memory? My initial try failed at the first step (read concatenation). T…
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We have previously discussed adding metagenomics compatibility by running fly in meta mode and doing genome binning.
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I’m working on reimplementing my https://github.com/jolespin/veba metagenomics software suite and was looking into lightweight alternatives to das tool. I already precompute the genes with pyrodigal …
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Run TriP canine datasets through metagenomic workflows
nmdc study is nmdc:sty-11-hdd4bf83
db.getCollection("omics_processing_set").find({'part_of':'nmdc:sty-11-hdd4bf83'})
There are 61 datasets. …
aclum updated
3 weeks ago
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Previse preterm birth in early pregnancy through vaginal microbiome signatures using metagenomics and dipstick assays – Daizee Talukdar – Cell
https://www.cell.com/iscience/fulltext/S2589-0042(24)024…
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Dear developers/maintainers/authors,
Thank you for developing and maintaining MOSCA. We are interested in applying your implementation on our multi-omics data set, but have ran into some issues. Pl…
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Below is a list of the updates to be made to JGI MetaG slots for the MUTTS ETL script (metadata for user facilities template transformation script)
- [x] Isotope Label
- [ ] #6
- [ ] Biosafety Ma…
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Hello,
Is BESST suitable for scaffolding metagenomics contigs ?
thanks,
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- given a sequence, search (raw) datasets for instances of the virus (sort of the use case that C. Titus Brown describes in a couple of blog posts)
- from the zoo database, create an SBT, and go thro…