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Hello,
I'm experiencing compatibility issues when using MetaPhlan3 (3.0.9) input in export2graphlan (0.22). I'm not getting any error but the resulting Graphlan (1.1.3) graph is incorrect. See imag…
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Dear luis,
Since also metaphlan 3 is out, maybe you can add this as well?
https://huttenhower.sph.harvard.edu/metaphlan/
Cheers,
Ulrike
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I don't know if this tool is still being monitored or developed, but it needs some update. I try to use it as part of Sunbeam, but the original Metaphlan2 project is removed from bitbucket, which mean…
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Hi, old friend
Currently I would like to import metaphlan result for downstream analysis.
But I failed in very first step. I tried to import result from metaphlan3.1 with
`abund_file_path
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Hi! I don't know if this repository is still maintained, but Struo almost looks like the solution for my problem, so I will just try. I would like to create a custom reference for MetaPhlAn3. I am onl…
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Dear curatedMetagenomicData Maintainers,
Considering that GTDB taxonomy is a cornerstone for microbial genomics research, I was wondering if there is a possibility to also provide GTDB taxonomy lab…
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I had an error when running metaphlan3 in the first step.
My command is "metaphlan SRR7563636_1.fastq,SRR7563636_2.fastq --input_type fastq -s sams/SRR7563636.sam.bz2 --bowtie2out bowtie2/SRR7563636.…
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Hi I recently installed humann3 and am trying to install the full databases. However, I get the following error:
Download URL: http://huttenhower.sph.harvard.edu/humann2_data/uniprot/uniref_annotat…
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### Description of feature
Last summer, @parnaljoshi came up with the idea of using MetaPhlAn to look for viral reads in tumor data. The general approach was:
- align tumor fastq to human genome …
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### Name of the tool
MetaPhlAn
### Tool homepage
https://github.com/biobakery/MetaPhlAn
### Tool description
"MetaPhlAn is a computational tool for profiling the composition of microbial communit…