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From @ValWood at https://github.com/pombase/pombase-chado/issues/1224
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Our MGI ISO xrefs are failing checks.
WARNING - Invalid identifier:GORULE:0000027: 1298204 does not match any id_syntax…
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- [ ] figure out how to query MGI's allele database by allele name
- [ ] set up http://aind-metadata-service/mgi_allele/[allele_name] endpoint
- [ ] given an allele name, return a aind-data-schema All…
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Hi @MGI-tech-bioinformatics
We have noticed that in the alignment summary file for our organism Plasmodium have o% of mitochondrial reads. This might be because of the default regex used for human…
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After switching to the MGIS interface in code_aster, you can delete the historical interface
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In particular, we would like to be able to visualize (i.e;, export to a ParaView-readable file) the first principal stress in a MFEM-MGIS calculation.
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In the metadata gathering step, use http://aind-metadata-service/mgi_allele to add allele metadata to subject metatdata.
- [ ] from ~either a supplied or~ generated subject.json file, extract subject…
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Update staging scripts to kick off an archive process to copy stuff to AWS (asynchronous).
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_From [jmcmu...@eagle-i.org](https://code.google.com/u/104698300204826542029/) on May 18, 2012 06:54:16_
***\* Use the form below to request a new term ***_
**_\* Scroll down to see a term request e…
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@pgaudet @kltm
When you check the box for “compare ortholog genes” in the Function-go annotation section:
If it is from a mouse gene page, the mouse ribbon stays, but all the boxes become blank.
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For CLE, ingest will compose of two steps.
1. ~~Trim a CSV ingest file down to only samples listed that do not currently exists.~~
2. Do the actual ingest with the newly created trimmed-down list.
T…