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Hello!
I want to open discussion about adding a support for [TreeSummarizedExperiment](https://bioconductor.org/packages/release/bioc/vignettes/TreeSummarizedExperiment/inst/doc/Introduction_to_tre…
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Hello,
some of the examples in OMA are too complex. The examples should be clear enough without unnecessary complexity because it might a) prevent readers to get interested on the framework, and b)…
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Hi Developer,
Thank you for developing this tool. Applying it to feature count data is quite straightforward. As you know functional information is also important for the microbiome data. I was wonde…
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Hello,
I am trying to download some HMP transcriptomic data, and the links provided in my manifest are giving me some trouble. I have tried downloading from other manifests, such as the example htt…
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Updating microbiome data analyses
As our databases and knowledge of biodiversity (taxonomy and function) grow, it is imperative to reassess
previously analyzed data that relies on these databases. Thi…
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Seems good!
Title options:
- Orchestrating microbiome analysis
- Orchestrating microbiome data science
- Orchestrating microbiome analysis with Bioconductor
- Orchestrating micro…
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We will be working with Australian Microbiome (based in Hobart) to load data into the ALA.
OBIS have done mappings as per the GBIF eDNA model for marine data, per marine voyage here: https://www.mari…
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Catalog of climate-microbiome relationships
We will build a Linked Data component within the NMDC Data Portal for exploration of mechanistic microbiome processes underlying environmental processes,…
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* humann nucleotide and protein database: https://github.com/galaxyproject/usegalaxy-tools/issues/855 (missing on AU/ORG)
* kraken2 - 5 toturials, multiple DBs - should all be updated to 2024 version…
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The Vaginal Microbiome is Associated with Endometrial Cancer Grade and Histology – Hesamedin Hakimjavadi – Cancer Research Communications
https://aacrjournals.org/cancerrescommun/article/2/6/447/7049…