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For 3 species determine number transcripts and plot length distributions..
For 3 species plot cumulative GO slim (bp)
For each sample within species (5) plot expresssion level histograms for mir…
sr320 updated
3 weeks ago
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Hello!
I have been using TOGA lately for transferring hg38 gene annotations to a newly constructed genome and it looks good so far! However, I do notice that annotations for non-coding RNAs such as…
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I am looking at the functions of the genes that are closest to the ncRNAs for Apul, Peve, and Ptuh.
Here's the R code for the 3 species that I have been using to examine the functions of the genes…
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Dear Author,
I have recently been using your tool and would like to inquire about the count.txt file. Could you please provide an example? Additionally, I would like to know if it is possible to se…
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### Background
When working on the nf-core/smrnaseq pipeline I saw an issue where a user was trying to use a gff file from a database that wasn't any of the ones that mirtop looks for ("miRBase", "Mi…
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### Description of the bug
There is a difference between the mirtop.tsv and mirna.tsv count files. The difference between these two files comes from the R script `collapse_mirtop.r` where the coun…
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**What is this request referring to?**
miRNA variant
**What is the name you would like SO to give the term?**
miRNA_variant
**What is the definition that you would like for this term?**
A var…
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Hi,
I am interested in using pre-trained models for miRNA NGS sequencing projects. Could you please clarify if the existing models on your repository are suitable for this purpose, or would it be n…
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I'm making a pptx version of beamer slides, where I have sliced up the beamer pdf with gs.
The code below works and would of course be easy to loop over all slides. Powerpoint says "PowerPoint found…
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### Description of the bug
I'm using sheep miRNA data. miRBase contains a few entries for sheep miRNAs but does not provide a gff file on it's download page. I instead used a gff of sheep miRNAs fr…