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**Update**: I created a table to keep track of datasets. It's available [here](https://docs.google.com/spreadsheets/d/1PnATNLBFIilLSYlriOtQuYzXUXB9EEcoaFH0l9wv9ls/edit?usp=sharing).
- [aiSEGCell](h…
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Hello,
Would you kindly recommend what menu should I use it for a segmentation of mitochondria?
Right now, I am trying to use segmentation paint and gave some label for mitochondria and ~mitocho…
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Hello -- I am having trouble using G4Hunter on the hg38 FASTA from UCSC.
It starts fine, but after about ~10 minutes, it crashes with a `Segmentation fault`:
```shell
~$ python2 G4Hunter.py -i…
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Hi,
I wonder whether there are ideas around to deal with 'non-dense' EM datasets. In the ISBI dataset (left) the objects are directly touching each other. In my dataset (right) there is quite a lot…
erjel updated
3 years ago
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Just a checklist of lit. review topics to check off. The easiest thing to work on when motivation is low
- [x] basic structure of mito. al la highschool
- [ ] Mitometer
- [x] MitoMo
- [x] MiNa…
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Hi,
I am using Pindel version 0.2.5b9, 20160729 and I got a segmentation fault.
I have a genome with 2 chromosomes and it works fine with the first but when starting the 2nd, it throws an error ri…
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Hi,
Can RUTH handle chromosome X? There isn't a mention of it in the manuscript, but the program accepts parameters for sex chromosomes. When I try to load a BCF file containing X-chromosome SNPs, …
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I think I have an idea 😸
What about we create two new modules:
Semantic segmentation
Instance segmentation
And the Activities and Exercises in these modules are not about how to crea…
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I love neuroglancer's right-click behavior in the 3D view, which quickly jumps to an object when I click on it. However, there's a common situation in which that feature is impaired.
When a neuron…
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Currently, users have extraordinarily flexible control over the rendering of image layers, thanks to custom fragment shaders. It would be great to have similar flexibility for segmentation layers. I…