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This Ensembl pipeline is probably one of the largest sources of incorrect IEA annotation.
One major issue that could be fixed is that the relationships appear to be ignored.
So in this case…
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I have been using mitochondrial annotation to teach prokka to a master class very successfully for the last few years - the mtDNA annotates very successfully and very fast so that the students can see…
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Check the origins of these terms.
They sound like just "regulation of mitophagy" rather than specific subprocesses. Mitophagy is activated in response to damaged mitochondria, or starvation.
Depo…
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Hi,
I have assembled the mitogenomes of 8 Microctonus aethiopoides using Flye in meta mode on ONT data. The mitogenomes were extracted from the assembly using the GetOrganelle tool. According to the …
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Dear all,
The proposal has been made to REORGANIZE respiratory chain complex terms to obsolete terms that specify a specific cellular location (e.g. plasma membrane, mitochondrion) and replace them…
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Dear all,
The proposal has been made to obsolete GO:0002169 3-methylcrotonyl-CoA carboxylase complex, mitochondrial
see https://github.com/geneontology/go-ontology/issues/28023
(move to GO:19052…
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tRNAs and mitochondrial RNAs can make up a large proportion of mapped reads and thus bias the normalization and differential gene expression procedure.
For example: "tRNA genes and genes covered b…
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### Discussed in https://github.com/SysBioChalmers/Human-GEM/discussions/690
Originally posted by **haowang-bioinfo** August 13, 2023
it's probably good to consider and prepare for accurate an…
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Hi! I really appreciate for developing this powerful tool.
I met a puzzling event - there were no any MT-gene detected in some of my scTE csv files, which could be found in starsolo matrix.
Why did…
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What is the selection criteria for GO annotations provided by UniProt? Are they supposed to provide all GO annotations from a UniProt entry because I've noticed the GO annotations in an UniProt entry …