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* **PTHR ID & PTN node:**
MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1
PTHR45782
PANTHER:PTN000119720
* **Type of Issue: Erroneous source or erroneous propagation, or other issue**
MTG1 is not…
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Hi Great tool thanks for maintaining it.
i have a question that relates to the lack of mitochondrial genome encoded genes and their corresponding ontologies.
In the following code:
```
hgnc
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* **PTHR ID & PTN node:**
GO:0031623 | receptor internalization | IBA with P50570 , 727949 , 71096 , 2513 , PTN008520579
* **Sequences with problematic annotation (ID + gene/protein name):**…
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I have been using mitochondrial annotation to teach prokka to a master class very successfully for the last few years - the mtDNA annotates very successfully and very fast so that the students can see…
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* **PTHR ID & PTN node:**
GO:0006105 | succinate metabolic process | IBA with FBgn0038437 , PTN000320077
* **Sequences with problematic annotation (ID + gene/protein name):**
https://www.po…
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Hi,
I used to have quite a number of pombe genes annotated to Leigh syndrome and now we have only 2.
I was annotating SURF1 pombe ortholog and the paper states
This no longer has a Leigh sy…
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* **PTHR ID & PTN node:**
GO:0004742 | dihydrolipoyllysine-residue acetyltransferase activity | IBA with locus:2092070 , PTN002351721 , 619859 , P10515 , Q8IJJ4 , S000005015 | GO_REF:0000033
…
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mitochondria large subunit
Systematic ID | Gene name | Product description | Budding yeast orthologs | Human orthologs
-- | -- | -- | -- | --
SPAC1610.02c | mrpl1 | mitochondrial ribosomal prot…
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tRNAs and mitochondrial RNAs can make up a large proportion of mapped reads and thus bias the normalization and differential gene expression procedure.
For example: "tRNA genes and genes covered b…
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This Ensembl pipeline is probably one of the largest sources of incorrect IEA annotation.
One major issue that could be fixed is that the relationships appear to be ignored.
So in this case…