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Good starting review [The roles of assembly factors in mammalian mitoribosome biogenesis ](https://pubmed.ncbi.nlm.nih.gov/34339868/)
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[Uploading get_org.log.txt…]()
[Uploading get_org.log.txt…]()
Hello, thank you very much for developing such a convenient and effective software for analysis, but I am in the process of assembling…
xhx-1 updated
2 weeks ago
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* **PTHR ID & PTN node:**
MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1
PTHR45782
PANTHER:PTN000119720
* **Type of Issue: Erroneous source or erroneous propagation, or other issue**
MTG1 is not…
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Systematic ID | Gene name | Product description | Budding yeast orthologs | Human orthologs | Targets
-- | -- | -- | -- | -- | --
SPBC115.02c | afg1 | AFG1 family mitochondrial ATPase/chaperone Afg1…
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mitochondria large subunit
Systematic ID | Gene name | Product description | Budding yeast orthologs | Human orthologs
-- | -- | -- | -- | --
SPAC1610.02c | mrpl1 | mitochondrial ribosomal prot…
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Hello @kimrutherford and @ValWood, first congrats on managing to pass the submission pipeline!
I noticed that the new submission no longer includes the mitochondrial chromosome sequence. I know tha…
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* **PTHR ID & PTN node:**
GO:0006105 | succinate metabolic process | IBA with FBgn0038437 , PTN000320077
* **Sequences with problematic annotation (ID + gene/protein name):**
https://www.po…
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New GO arrangement
iron-sulfur cluster assembly complex (GO:1990229)
|_cytosolic [4Fe-4S] assembly scaffold complex (GO:1904564)
|_cytosolic [4Fe-4S] assembly targeting complex (GO:0097361)
…
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[IEA-process.txt](https://github.com/user-attachments/files/17434824/IEA-process.txt)
Would love to get rid of these over the next 6 months, either remove or PAINT
1. remove transposable elemen…
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I'm using getorganelle to extract mitochondrial genomes from insects. I first do an assembly using SPAdes (because we use that output for other downstream tasks anyway), and then I run get_organelle_f…