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Hi everyone,
I want to create a database with all sequences of mithocondria from insects, like this:
```
haystac database \
--mode build --mtDNA \
--query '("Insecta"[Organism] AND …
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* **PTHR ID & PTN node:**
GO:0031623 | receptor internalization | IBA with P50570 , 727949 , 71096 , 2513 , PTN008520579
* **Sequences with problematic annotation (ID + gene/protein name):**…
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* **PTHR ID & PTN node:**
GO:0006105 | succinate metabolic process | IBA with FBgn0038437 , PTN000320077
* **Sequences with problematic annotation (ID + gene/protein name):**
https://www.po…
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Hi @hoelzer,
First, thank you for designing this nice tool.
I want to use poseidon in a set of mitochondrial genes, but, apparently, poseidon only uses the Standard Code.
Is there an option to de…
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I love Orthofinder, it has been so helpful in our research in so many ways.
I am having one particular issue where I am getting non-informative sequence IDs in all the fastas in the Single_Copy_Ort…
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Hello, I want to use novoplsty to assemble numts, but the result I got did not store numts file, the following is my configuration file and the result I got, the version I used is NOVOPlasty4.3.5.pl, …
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Hello,
Thank you for creating this great tool. I have successfully run read2tree using marker genes downloaded from OMA browser and my own data, which seems really great.
However, I found some pro…
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* **PTHR ID & PTN node:**
GO:0004742 | dihydrolipoyllysine-residue acetyltransferase activity | IBA with locus:2092070 , PTN002351721 , 619859 , P10515 , Q8IJJ4 , S000005015 | GO_REF:0000033
…
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Right now (as of PR #5) when a sequence is loaded via drag and drop the first line is ignored, corresponding to FASTA data format. This will not work for all formats - default should probably be to co…
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Hi! I am having some trouble filtering my RNASeq reads. I have a lot of mitochondrial rRNA that I want to get rid of, but I can't seem to manage that without also filtering out a lot of mitochondrial …