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Hi everyone!
I encountered this error:
ERROR ~ Error executing process > 'GENOMAD (1)'
Caused by:
Process `GENOMAD (1)` terminated with an error exit status (2)
Command executed:
gen…
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While running
process > RENAME (1)
an error comes up regarding the python env:
Command error:
/usr/bin/env: ‘python’: No such file or directory
Most presumably the pipeline is dependent on…
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Hi, the publication date of prokka is too long and the annotation efficiency is very poor. The author of prokka currently recommends using bakta, and the files generated by bakta are similar to those …
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Writing genome FASTA file into reference folder...
...done
Indexing genome FASTA file...
...done
Writing genes GTF file into reference folder...
...done
mkref has failed: error building re…
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Hi,
I recently tried eggnog-mapper website to annotate my bacterial genome for COG analysis. From the resulting output I was using the column of COG_categories to calculate the number of genes annota…
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Hi, thank you for developing this pipeline. We are particularly interested in the MGE and AMR annotation part, as they help uncover the associations between them. However, when we attempted to run the…
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Hi Oliver,
I hope you do well,
Here, it is just an inquiry about the equation of coding density.
The background of the questions, I am comparing two sister species (the first is a successfu…
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This seems like a great pipeline, however, as far as I am aware Singularity cannot be installed without root privileges. Is it possible to run this pipeline without needing to install singularity?
…
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Hello,
NCBI has listed a COG category of [X] Mobilome: prophages, transposons. But I do not find a sing X assigned by eggnog mapper in several genomes from several different species that I know hav…
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![image](https://user-images.githubusercontent.com/69087097/182851426-d64e5292-d595-44e8-b3ad-308c536db5b5.png)
Could you please explain why isnt there a fit?
thank you in advance!