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I ran into a ModelSEED::globals::WARNING that I had created in the past month and forgot about. There was nothing wrong with the code, and the warning was appropriate. However, the output generated …
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Hi @liaochen1988 .
This is a general question.
In order to gap fill a modelseed model, one would need an analogous file with the `bigg_universe.xml` of yours; is that right ?
On top of that, a…
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So I just tried `ms update`. I don't think I've ever used it before, as all this time, I've just been doing `git pull` for the master branch. But for OS X, I got this:
```
Cannot update your system…
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By that, I mean that there's a number of reactions in the imported biochemistry that don't have a ModelSEED identifier associated with them, 3,529 to be exact (~15%), in fact, they don't have _any_ al…
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after an ms-update, commands like fba-checkgrowth print no results. There are calls to interface::LOADENVIRONMENT with no arguments that seem to be implicated.
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I want to figure out how KBase is going from the RAST annotation to the ModelSEED IDs to resolve #49.
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So, I did a git pull this morning. If I do this:
```
bash-3.2$ ms stores rm local
bash-3.2$ ms stores add local --type file
bash-3.2$ ms save biochemistry/seaver/Old_MS_Biochem < /Users/seaver/Docum…
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Any ideas what might be causing this? We have just updated and switched to a new biomass file for the model.
Thanks!
mdlautocomplete
Creating problem directory: 359
Creating list of inactive reactio…
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We are trying to run the mdl-autocomplete command are are getting an error on one of our installations of ModelSEED. Works on other installations.
Here is the error:
---
Turing:~/Desktop/ModelSEED/…
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@samseaver requested a way to tell the ModelSeed installation (mainly the MFAToolkit) to only use a specific solver. I'm not sure if this is possible. @cshenry ?