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Morphological reconstruction is super powerful, e.g., can be used for local maxima detection:
https://github.com/ijpb/MorphoLibJ/issues/47
- start from function f (-> the dark curve)
- consid…
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## Description
I encounter examples where running morphology.reconstruction() crashes python without error message - it just throws a python system error in windows after which the kernel has to be r…
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https://www.biorxiv.org/content/10.1101/2024.06.06.597812v1
https://github.com/lahammond/RESPAN
Accurate and unbiased reconstructions of neuronal morphology, including quantification of dendriti…
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`fillsinks` currently assumes that arrays are stored in column-major order: the dimension with size `nrows` should vary the fastest. This follows MATLAB, Fortran and Julia practice but the default Num…
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When you give a DEM with NaNs to `fillsinks`, it will currently hang because the morphological reconstruction never converges, and the maximum iteration cutoff is handled incorrectly.
The MATLAB co…
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## Description
When running fill depressions (Python Library pysheds) on a 6 GB DEM, running into a segmentation fault error. Using IPDB, I located the segmentation fault error happens at line 205 of…
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[Cell Types whitepaper](http://help.brain-map.org/download/attachments/8323525/CellTypes_Morph_Overview.pdf?version=4&modificationDate=1528310097913&api=v2), page 12
>Reconstructions were saved in th…
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Allen Institute's [Morphology technical white paper](http://help.brain-map.org/download/attachments/8323525/CellTypes_Morph_Overview.pdf?version=4&modificationDate=1528310097913&api=v2):
>Serial imag…
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## Description
Is it normal that function `morphology.reconstruction` returns `float` array for `bool` input image? Documentation does not have information about it.
Expected return type: `bool`.
## …
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[this one here](https://allensdk.readthedocs.io/en/latest/_static/examples/nb/cell_types.html)
The morphological reconstruction needs to be flipped upside down and the clustering example needs to b…