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**Describe the bug**
A clear and concise description of what the bug is.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to 'MS Visualization'
2. Click on 'Export graphics' in MS/MS spe…
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### Describe the question or discussion
We have a request for a new CV term for mzQC (https://github.com/HUPO-PSI/mzQC/issues/244) and it requests a TIC based on MS1 spectra only.
There is already M…
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Hello,
I used MS-GF+ on the mzML file, using the .faa file as reference, and produce the .mzid file. All files are in the following link: https://figshare.com/s/b65fc594da19f0f9347f . The raw dat…
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I have been getting errors when importing molecule files from sdf, msp and json file types which should all be compatible with the custom database imports. Most notably I cannot import downloaded data…
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Validating Crosslinking data:
- 211026EWas01_E1.mzML
- 211026EWas02_F1.mzML
- 211026EWas03_F2.mzML
- interact-1_2.ipro.mzid
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Currently large MS/MS datasets are handled as lists of `Spectrum` objects.
We might want to consider an own `Spectra` (or differently named) dataset class with more functionality than the simple li…
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Hi, all,
I use the xcms3 to get the XCMSnExp object with dataset including full scan or DDA mode. The table(XCMSnExp) function can give me the MS1 and MS2 scan information.
However, whe…
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Operating system and version: Windows 11
Mzmine version 4.2.0
In previous versions of MZmine, the function I am trying to use was called MS/MS Spectral Networking. When attempting to use the curre…
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```r
library(Biobase)
library(MsExperiment)
library(MsIO)
library(MsBackendMetaboLights)
library(xcms)
library(Spectra)
library(MetaboCoreUtils)
param
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The current speed of zooming in and out is really slow. It is even slower than uploading the imzml file for first time. I think this can be improved can be at least as quickly as data upload.