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Currently, when MS2PIPFeatureGenerator calls ms2pip.correlate(), the latter may download xgboost_models_files from the Internet if they are not present in the model_dir directory. Can we please have a…
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> Hi, ralph
> Hope you are doing well,
>
> First, since I was testing your windows installation to make a protocol for a gui user, things like pip are not used.
>
> Now, I just tried reinstall…
RalfG updated
2 months ago
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**Describe the bug**
AlphaPept model is not available.
**To Reproduce**
```
(oktoberfest-env) tobiasko@fgcz-c-072:/scratch/cpanse/PXD028735/oktoberfest$ python -m oktoberfest --config_path spe…
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Hi,
I tried to run MS2PIP v.3.6.1 from the command line in Ubuntu 18.04. I supplied the config text file and the .peprec file like this when I ran the command:
`ms2pip -c config_ms2pip.txt -n …
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Hi,
I am trying to use ms2Rescore to rescore the output i get from a searchGUi / peptideshaker analysis
here is the log of ms2rescore in debug mode
```
Running DeepLC for PSMs from run (1/1): `5…
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Hi,
I have been trying to do rescoring using the MS2rescore user interface on some MaxQuant results, but I keep getting this error message:
"File "psm_utils\io\maxquant.py", line 98, in _evaluat…
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Hello @RalfG,
First thanks very much for developing such wonderful tool, I really enjoyed working with it!
I have a question regarding how to apply MS2rescore to bruker (.d) or broadly speaking,…
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So there is some need to think about in silico MS/MS from a variety of proteomics and metabolomics sources. With real data, there is no need to think about parameters in generation because the data is…
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> Hi Ralf,
>
> I tried the new features today and they seem to work. However, when I set more than one cpu in the config file, the process seems to get stuck in the multiprocessing step at the very…
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Hi,
I was trying to run Inspire using ms2pip instead of Prosit, but I ran into an issue that I'm not sure how to solve. The software is supposed to generate the file ms2pipInput.preprec to start ms…