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Following the installation of Anvio (#23) we can now run it by activating the mamba environment `anvio-8`.
Lets create a new directory for the anvio run that we will use as the working dir.
```
m…
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### Description of feature
This issue is to provide an overview of different tools and related sub-issues related to supporting multiple modalities:
- CITE-seq (=RNA+protein) (https://github.co…
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Comparative characterization of the infant gut microbiome and their maternal lineage by a multi-omics approach – Tomás Clive Barker-Tejeda –Nature Communications
https://www.nature.com/articles/s4146…
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When one searches for cross-correlation, they'll see that it's mostly related to time series correlations. That can become a font of confusion for beginners.
Might "cross-association" reflect bette…
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Using various tests and measurements of the same target. For example, Metholation and transcriptomics could perhaps be useful co-domains. https://www.biorxiv.org/content/early/2018/04/11/217554 is a …
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**Signature/ networks over time**
- [ ] Are the DE genes in the signature the same over time for each cluster?
- [ ] How do the main components of the signature vary?
- [x] run for #V06 and c…
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Inputting multiple lists and gmts for the R-package may be cumbersome. We have to know what ID type each ID type is, to determine which GMTs are needed. For example, if there are no metabolites, we ca…
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How to handle spatial multi omics data?Can you upload and process the data file regarding this issue
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Link to initial meeting notes: https://drive.google.com/drive/u/0/folders/12ecVxDVpwvIyGf1GVh8AO32qirFRKthT
- [x] https://github.com/cct-datascience/organization/issues/1352
- [x] Re-schedule meetin…
Aariq updated
10 months ago
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![Multi-omics AWG logo](https://user-images.githubusercontent.com/92759843/142992322-698c6c7f-14a1-40b8-ad71-50c13e0a35cc.png)