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- [ ] 1. Validation of Crosslinking MzIdentML (mzID) files.
- [ ] a. Validate files of a given folder(Input will be file path)
- [ ] b. Multiple MzIdentML files
- [ ] c. Individual MzIde…
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We need to make this library supported by command-line options for each functionality including:
**1. Validation of crosslinking mzIdentML (mzID) files.** https://github.com/PRIDE-Archive/xi-mzide…
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To preserve Waters and Sciex source spectrum links, writing nativeID in the output pepXML/mzIdentML is necessary. Please read in the nativeID when reading spectra and pass it through when writing pepX…
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In contrast to the proprietary MSP file format https://github.com/OpenChrom/OpenTyper/issues/2 the mzIdentML (previously known as analysisXML) may be suitable as an open standard to exchange library e…
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The API for `MzIdentMLWriter` is much rougher than `MzMLWriter`, and was designed with the assumption the user would provide generators to lazily provide all of the large collections. This makes it le…
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> Dear team,
>
> I am using Crux Percolator to process MS-GF+ output converted to PIN as per https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3975676/
>
> I am using Crux Percolator rather than the …
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Hi,
I'm using pyteomics' great mzIdentML parser to read crosslink data out of mzIdentML.
There's one particular point in the code where memory use suddenly climbs:-
https://github.com/PRIDE-Archive…
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We have to find out the list of datasets with the following conditions:
- mzIdentml 1.2 (Complete submission)
- Peak list files corresponding to the mzid
- Software that produces the files Pr…
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in the Peptide elements there can be invalid Modification elements like:
```
```
(don't think the empty cv param is allowed)
do you need the whole file? (its not mi…
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Validating Crosslinking data:
- 211026EWas01_E1.mzML
- 211026EWas02_F1.mzML
- 211026EWas03_F2.mzML
- interact-1_2.ipro.mzid