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I am trying to convert a .cdf file from a Shimadzu machine to .mzml to use in GNPS, and when I try, it says that exporting to .mzml requires the openchrom parser, but when you use openchrom it says it…
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I used the SCIEX X500R instrument to obtain the raw data in.wiff2 format, but when I used msconvert to convert it, it reported an error. Here are the details of the error:
```
[Reader_ABI::fillInMet…
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I'm doing a data_type=2 GPF search. Is it supposed to always write the uncalibrated mzML even though I have:
write_calibrated_mzml = 0
write_uncalibrated_mgf = 0
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**Describe the bug**
After successfully running pcpfm assemble an generating a new pcpfm_experiment folder pcpfm asari fails to locate the corresponding mzml files.
My metadata.csv file is
```
…
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To preserve Waters and Sciex source spectrum links, writing nativeID in the output pepXML/mzIdentML is necessary. Please read in the nativeID when reading spectra and pass it through when writing pepX…
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_I'm using gui V1 on windows 11. Used paste MS runs from clipboard._ to submit the raw file.
> Error coming:
Converting raw files to mza format...
Processing file: D:\GBC_2023\mzML\GBC_S2.mzML
P…
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Hi,
I am going to use DIA-NN 1.9 on linux for metaproteomics. It is mentionned that on Linux one .d, .mzmL and .dia data are supported. My data are in .wiff file.
If I am using the combination of…
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- Currently the streamlit implementation only supports MGF files as spectra input
- Theoretically fragannot and fraggraph support input of mzML
- _theoretically_ because not everything works depen…
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Hi Casanovo
This is the first time i'm attempting to use casanovo, i have tried to follow your guide at : https://casanovo.readthedocs.io/en/latest/getting_started.html
I'm getting this error (s…
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Dear developer,
I am extremely interested in the software you are distributing. Precursor m/z correction was a long time issue for LC-MSMS data I normally acquire on Bruker Impact II instrument. …