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Following up on an email I sent to the mailing list about mappings to other resources like NCIT, UMLS and DOID, I noticed that the mappings file at https://github.com/cBioPortal/oncotree/blob/master/s…
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Some users (@korikuzma) have reported timeout-like issues when importing NCIt. We should resolve this.
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I have been looking at the Oncotree resource and noticed that MONDO provides xrefs to it. Oncotree is organized in a way that at the top level, it lists tissues (e.g., LUNG, PANCREAS, etc.) and all de…
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The model endpoint files define the `filters` parameter with an examples such as:
**Existing Syntax:**
```yaml
examples:
- - variantcaller:GATK4.0
```
or
```yaml
examples:
- …
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From @sundareswarpullela: Bug found in ARAX Pytest https://github.com/RTXteam/RTX/blob/4c776b4a27d96e1462173abe7963792608d8b879/code/ARAX/test/test_ARAX_expand.py#L247-L257C1
Example: `{'nodes': {'…
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Merges for the normalization endpoint are showing about 350 concepts from DO and NCIt that our first pass missed. For NCIt, many of them are subclasses of "finding" (not disease/disorder), but not all…
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As part of our great OBO wide ID sweep, I would like to understand peoples positions about the whole NCIT/NCBITAXON OBO ID vs Bioportal ID question. We see basically two variants of these floating aro…
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Many of these may end up being subproperties of RO relations, as they are quite specific
@balhoff may have done some of this already