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### Describe the bug
Tried to rebuild a docker image from the neurodocker configuration described in [**environment.md**](https://github.com/Inria-Empenn/narps_open_pipelines/blob/main/docs/environ…
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@yarikoptic so now that we have this minimal stripped-down version, and it works, how would we add it to neurodocker?
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Neurodocker (https://github.com/ReproNim/neurodocker) is a Python-based tool for easily generating Singularity and Docker container definitions from shell scripts. Pkg2 has had support for parsing the…
Vbitz updated
4 months ago
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Write a neurodocker paper. set up a google doc for this. Think of what neurodocker enables and what challenges remain. What are the benefits of containerization? Create an infrastructure that allows f…
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Hey there,
I tried to reproduce the steps described here in order to adapt it to my needs by adding a command I need in docker (dtifit) so that I can use it in one image together with mrtrix3.
U…
drs-m updated
2 years ago
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Hi Jakub,
I noticed that the links to the ANTs binaries in the README are no longer working, returning a 403 error.
Neurodocker still attempts to pull from these links, which results in an error…
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I tried to install ANTs v2.3.4 in my neurodocker recipe, and got this in my output. It points to the address [https://dl.dropbox.com/s/gwf51ykkk5bifyj/ants-Linux-centos6_x86_64-v2.3.4.tar.gz](https://…
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In order to conduct regression testing of Nipype, Satra's team developed a tool to generate Docker scripts from Python neuroimaging specs. The result is Neurodocker at: https://github.com/kaczmarj/ne…
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Hello,
I have a few questions while running Heudiconv:
1. Is there a way to pass an option to dcm2niix while running heudiconv? For example to force stacking.
2. I am noticing after the con…
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initial DNK draft [here](https://docs.google.com/document/d/1JMTR5VYLEGaQbS2UVEKQc1b5oTdq_i5gCXPUi1i9cuA/edit#heading=h.f9zxbi7x3yy8).
Initial text pasted here for completeness:
How Would ReproNim…