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This shows up, when I am selecting RNAseq or other NGS (genomics). If I do genomics, it might be that I act…
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Dear @emmanuelparadis,
thank you for maintaining the package pegas.
I'm a vet and doctoral student and I'm currently working with NGS data obtained from parasites. The "problem" is, that the seq…
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Hello,
I was able to install megSAP on our server and after a successful test run with provided panel data I am trying to run analysis of WES data. Everything runs smoothly until the VCFAnnotatefromV…
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### Description of the bug
When in a sample the extraction data are fulfilled with all additional parameters the state is set to "completed" however it must be assigned_parameters.
Also when selec…
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KPIC nights use NIRC2 as the selected instrument and the guider is k2acama. Prior to 2024B, KPIC was on the schedule as NIRSPAO+NIRC2-NGS and the NIRC2 program was identified to populate PROGID and a…
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Hi,
I am analyzing the same data through installed tbprofiler and the online version. I got the Delamanid resistance when using the online version. The version of tbprofier that I am using is 5.0.1. …
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HI,
I am interested in checking a bat assembly using craq. I installed it using conda. Installation went fine, supposedly, but then it failed when I tried to run it using short-read data that I mappe…
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Hi jyyu,
Does the example NGS data (NGS.example.tsv) contains the raw read counts without doing any normalization?
Besides, I met some warnings when I run ScreenBEAM on NGS data like following. Shou…
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As the title, an error was happened when I run "CellNeighborEX.categorization.generate_input_files(data_type="NGS", df=df_processed, sample_size=30, min_sample_size=1)" on SSliver dataset
THZ34 updated
2 months ago
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Dear @tsackton @erikenbody and other developers,
Thanks for developing such a capable and interesting tool!
I am looking to deploy snpArcher for population genomics projects but the starting dat…